Glyma04g10720 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g10720

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8957052
stop:	8960680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10720

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40080	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial ribosomal protein L27 \| chr5:16040190-16041529 REVERSE LENGTH=94	SoyBase	E_val: 4.00E-48	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21338	Panther	MITOCHONDRIAL RIBOSOMAL PROTEIN L41	JGI		ISS
PF09809	PFAM	Mitochondrial ribosomal protein L27	JGI		ISS
UniRef100_G7JZ57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=2 Tax=Medicago truncatula RepID=G7JZ57_MEDTR	SoyBase	E_val: 4.00E-46	ISS
UniRef100_I1JVB1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVB1_SOYBN	SoyBase	E_val: 5.00E-61	ISS

Expression Patterns of Glyma04g10720

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10720

Paralog	Evidence	Comments
Glyma06g10570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10720 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g099100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10720

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g10720

Limit To All Plant Sequences

>Glyma04g10720.2   sequence type=transcript   gene model=Glyma04g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCCTAAACCCTCACAGTCCTGACGGTGCCACACCGCCACTGTCTTTGTTCTTTCTCCGCTTTCACTGATTATTCGTCGACGGTTCCAACCCAATTTGTTATCTCTCTGCGATTTCTAGGTATGCTTCTCTGTTCTCTCTCTACTGTATGTTTGTTACGGGTAACGTAATATTTTGATGCGCGTAAGATCGAAGCTCCGTCAAGTAGCTTCTGCGTCTTTTCTGAATATTTGACGCCAAACCATAGAAAAAGATGCCTCTGGGACTCATCTTAGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCACTCGATATTCTATCATCAAAACGTGCTCCTCGTGGTTATTATAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTGGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGACTGATTTCAAGCTCAAACCATACGTATCTCAGTGTCCTATAGAAGCGAATACCTCTGAAGCTTCCCAAACGGCTAAATAACCAAATTGAGTAGTGTAAGATACTTTCTTTGTAACTACAGATGTTTTTCCATGAAGAGGAGTTGGCATGCCCTTCGTTTTGTTGTTTGTTCTCTCCTTTTGAACTACGCCTTGAGTAATTATTGACCGGCACAAATATTTGATAGTTCAATAGGATATTAACCTATCAATCAATATCATTAACATATGTAGTGCGCTGAATGATTTGGACTATCAAAACTATCAATAATTTTCATCTGTTGTTCCCCGATTAGTTTGGTTATGTTTGGATGGATGGAGTTGTTAATAATCGAGTGGAATTGTAAAAGCTGAAAAGACCTTGAGCCATTGTCTGGGTTTTTTTATTAATGAAAAGAGATGATCAAAGGTGGATTCAAACCACTTTAAATTACT

Coding sequences of Glyma04g10720

Limit To All Plant Sequences

>Glyma04g10720.1   sequence type=CDS   gene model=Glyma04g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTGGGACTCATCTTAGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCACTCGATATTCTATCATCAAAACGTGCTCCTCGTGGTTATTATAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTGGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGACTGATTTCAAGCTCAAACCATACGTATCTCAGTGTCCTATAGAAGCGAATACCTCTGAAGCTTCCCAAACGGCTAAATAA

>Glyma04g10720.2   sequence type=CDS   gene model=Glyma04g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTGGGACTCATCTTAGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCACTCGATATTCTATCATCAAAACGTGCTCCTCGTGGTTATTATAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTGGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGACTGATTTCAAGCTCAAACCATACGTATCTCAGTGTCCTATAGAAGCGAATACCTCTGAAGCTTCCCAAACGGCTAAATAA

Predicted protein sequences of Glyma04g10720

Limit To All Plant Sequences

>Glyma04g10720.1   sequence type=predicted peptide   gene model=Glyma04g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPNYVVPDLTDFKLKPYVSQCPIEANTSEASQTAK*

>Glyma04g10720.2   sequence type=predicted peptide   gene model=Glyma04g10720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPNYVVPDLTDFKLKPYVSQCPIEANTSEASQTAK*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain