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Report for Sequence Feature Glyma04g10680

Feature Type:gene_model
Chromosome:Gm04
Start:8914793
stop:8915741
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10680
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12870AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:4094417-4095037 REVERSE LENGTH=206 SoyBaseE_val: 3.00E-98ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
UniRef100_I1JVA8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVA8_SOYBN SoyBaseE_val: 3.00E-146ISS
UniRef100_Q9FKT6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dbj|BAA81760.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FKT6_ARATH SoyBaseE_val: 4.00E-21ISS

Expression Patterns of Glyma04g10680
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10680
ParalogEvidenceComments
Glyma06g10530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10680 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g098800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10680
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g10680
>Glyma04g10680.1   sequence type=CDS   gene model=Glyma04g10680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAACAACAGCGAAGAACAACAGAACAACTCAACAAGATCATCGATCATGGAGTGGAAGCAGATGCATCCACTTCACCAAATCGCAGAAACACCCACCCACAAGCTCCTCCTGAAGCAATGGCTGAAGGAGGAAGAACTCATCAACAGCCGCATAGCGTTGAAAGAGACCCAAATAGATTCAACCCGCAAAGAGATCACCACCCTCTACATCTTCTTCTTCCTCTTCCACTCCACCACCCTCATGCTCCTCTTCAACTCCTCGTCACCCTCTTCCTGTCACAGATCGTGGGTCCCTTCGCTGTGCTCTCTGTTATTCTCGCTGGGCCTAATATGGGCCTTGCGTTACAAGAGCGACGTGGAGGCCCACGTGGAGAAGATGCTGCAGCGGGAGAAGGAGGACAAAGGGTTGCTGGGGAAGTGCGTGGAGGAGTTGAAGAAGAAAGGGTTGGAGTTTGATTTGCTGAAGGAGGTTGATGCGTTGAGGAGGGCCAAGAGTTTGAGGGTGGAGAACAAAGAGGTTAGGAAGTGGTCTTCCAGGGACTTTGTTTCTTTGTTCTTCTTCTCTATGGCTTGCTTCTCTCTTGCTCTCATGAGGGTCATCTTGTGCACTTAG
Predicted protein sequences of Glyma04g10680
>Glyma04g10680.1   sequence type=predicted peptide   gene model=Glyma04g10680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANNSEEQQNNSTRSSIMEWKQMHPLHQIAETPTHKLLLKQWLKEEELINSRIALKETQIDSTRKEITTLYIFFFLFHSTTLMLLFNSSSPSSCHRSWVPSLCSLLFSLGLIWALRYKSDVEAHVEKMLQREKEDKGLLGKCVEELKKKGLEFDLLKEVDALRRAKSLRVENKEVRKWSSRDFVSLFFFSMACFSLALMRVILCT*






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