SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09060 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). | chr4:5797781-5800253 REVERSE LENGTH=341 | SoyBase | E_val: 3.00E-70 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| UniRef100_C6THU5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6THU5_SOYBN | SoyBase | E_val: 2.00E-171 | ISS |
| UniRef100_G7J4G3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SKIP interacting protein n=2 Tax=Medicago truncatula RepID=G7J4G3_MEDTR | SoyBase | E_val: 5.00E-90 | ISS |
|
Glyma04g10641 not represented in the dataset |
Glyma04g10641 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g10480 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g098500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g10641.1 sequence type=CDS gene model=Glyma04g10641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCTCCCTCGAGACGTGGACGACTACTTCAAACAAACCCTCGACGATACATTAGGGATTCCCGTATCGTCGCGAACCCTAGAATCCAAGCTTCAAGCTTCCCAAGAGTCGCAATGGCGCCTCCGCGAACACCTCCTTTCCCTTTTCCCCCAATTGAAGCGGAAAGACCAACTCATCGACCGCTTCAAGTATGAAGCGGGAATGAACGCGCGAGCTCTGAAGAAGTTCGTTGAGGAGAATCAGAGACTGGCGACGGATTGTGAGAAATTGTTGGCTCGCTGCCATCAGTTGGAGAATGATCGCGCCCTGTATGATAAAGACAGAGAAGCGTTGATGGAGTTTGGGAACGACGCTGACGAACGGGCACGGGAGGCTCAAACCCGAGTTCTTGATTTGGAACGGGATTTGCTCTTTATGGGGAATGAATTGAACAAATATAAGAATCAGCATCAATTGGTGAATCCTTCTGTGTGCACTCCTGGGGAAAATATTTTACTTGATTCTGTTTTAGCAACTCTTACTAGTAAAGATGATGATTCTACATATGCATTTTTGCAAGTAAACAGTGAGAATGAGGCCTGTAAACAGTTTCTGAGTATGTGGAACTGCATAAACCCATCAACTCGGAGTGTTTTGTCCCTTGTTGCTAAAATCAAGTCACTTGAGAAGGATAAGGAGCATCTAAGAACTAACCTTCACAAAGCTGAGGAGGAGGTCAAATTACTGTTTGATGAAAACAATGTATTGGAAAAGGAGAACAAAAGGTTATTGAGGATATACAAGAAAAGAAACCATCCCGATTCTGGGGGGAGCATACCAACAGCTAGGGGTGGGTAA
>Glyma04g10641.1 sequence type=predicted peptide gene model=Glyma04g10641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLPRDVDDYFKQTLDDTLGIPVSSRTLESKLQASQESQWRLREHLLSLFPQLKRKDQLIDRFKYEAGMNARALKKFVEENQRLATDCEKLLARCHQLENDRALYDKDREALMEFGNDADERAREAQTRVLDLERDLLFMGNELNKYKNQHQLVNPSVCTPGENILLDSVLATLTSKDDDSTYAFLQVNSENEACKQFLSMWNCINPSTRSVLSLVAKIKSLEKDKEHLRTNLHKAEEEVKLLFDENNVLEKENKRLLRIYKKRNHPDSGGSIPTARGG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
