Report for Sequence Feature Glyma04g10630
Feature Type: gene_model
Chromosome: Gm04
Start: 8837673
stop: 8839781
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g10630
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72210 AT
Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320
SoyBase E_val: 2.00E-92 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
PTHR11534 Panther
MYOGENIC FACTOR
JGI ISS
PTHR11534:SF7 Panther
MYOGENIC FACTOR MYF-5
JGI ISS
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI ISS
UniRef100_F0V437 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Basic helix loop helix 1 n=1 Tax=Medicago truncatula RepID=F0V437_MEDTR
SoyBase E_val: 2.00E-144 ISS
UniRef100_I1JVA4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVA4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g10630
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g10630
Paralog Evidence Comments
Glyma06g10470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g10630 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g098400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g10630
Coding sequences of Glyma04g10630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g10630.1 sequence type=CDS gene model=Glyma04g10630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTCACATATGGTTGCGACAAGGATTATTTGTACTCCTTAGTAGAACACAACTATGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACTTTCATGCAAACTGGGATTCATCTTCTACCTCAATGTTGCAAAACGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGATCAATCCATGACCACCGCTCCTTTCCCTCCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACTGCCACGAGTCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACACGGAGGAAATCGAGAACCAGAGGAGGACCCACATTGCTGTTGAACGCAACCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCGTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGTCAAAAGAGAACGAACCAAGCGCAAGAGAATGTTGTTGGGTTAAATGGGTCGACAACAACACCCTTTGCTGAGTTCTTCACGTTTCCTCAATACACGACACGTGGCAGGACGATGGCACAGGAGCAGAAACAGTGGGCTGTAGCAGACATTGAAGTGACCATGGTGGATAGCCATGCGAATCTAAAGGTACTCTCAAAGAAACAACCTGGGCAGCTTATGAAGATCGTTGTTGGGCTTCAAAGTCTCATGCTCAGTATTCTCCACCTTAATGTTTCCACTCTTGACGACATGGTCCTTTACTCAATTAGCGTCAAGGTAGAGGACGGGTGTCGGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAGCTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA
Predicted protein sequences of Glyma04g10630
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g10630.1 sequence type=predicted peptide gene model=Glyma04g10630 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALEAVVFPQDPFTYGCDKDYLYSLVEHNYGNFQAAEEEKVLLGIINNNIEHNFHANWDSSSTSMLQNVKEQQWDSHSSPEACTVDQSMTTAPFPPPPPSSSVEATVTATSRRKRRRTKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQAQENVVGLNGSTTTPFAEFFTFPQYTTRGRTMAQEQKQWAVADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLMLSILHLNVSTLDDMVLYSISVKVEDGCRLNTVDEIAAAVNQLLRTIQEVTFS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
