Glyma04g10610 - SoyBase

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Report for Sequence Feature Glyma04g10610

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8810558
stop:	8811580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72200	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:27169935-27171149 REVERSE LENGTH=404	SoyBase	E_val: 2.00E-61	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22765	Panther	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	JGI		ISS
PTHR22765:SF21	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7J4G7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1N n=1 Tax=Medicago truncatula RepID=G7J4G7_MEDTR	SoyBase	E_val: 7.00E-111	ISS
UniRef100_I1JVA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10610

Paralog	Evidence	Comments
Glyma06g10460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g098100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10610

Limit To All Plant Sequences

>Glyma04g10610.1   sequence type=CDS   gene model=Glyma04g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCACTTTCACACACTCCATTTTCCACCATGACCTTCTTTTTCTTTTCTATTTCTTTCTCCTCACGGAATTTCCGCCGCAGGCCACCGCGCAGCCTCCGAACACGCTGACGCCGCCGCCGCAGCAGGACCGCTTTACGAGGCTGAAGTTCGACAAATCCATGGCCATCGTTCTGCTGATCCTGGTGGTGGTGTTCTTCATCCTAGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGCAGGATGGGAGGGAGGTTCGACCTCTCCATCTTGATCTCGCGCCGGCAACGCGGCCTCGGCCGCGAAGTCATCGAAACGTTCCCGACGTTCGTGTACTCCACCGTGAAGAGCCTCAAGATAGGGCGCGCCACGCTAGAATGCGCCGTGTGCCTAAACGAGTTCGAGGAGGATGAAACGCTACGTTTCATCCCCAACTGCAGCCACGTGTTCCACTCCGACTGCATCGACGCGTGGCTCGCAAACCACTCCACTTGCCCCGTCTGTCGCGCCAATCTTACTTCCAAACCCGATGACCGGTGTTCTGCTCCTATCCAAAACCCGGATCCGGAGCAGCCCGTTTTAACCTCATCAACCCGACCCGAAACCGTGGGTGCTGATTTGCTTAGTCAGAACCGTACACCGCCGCGACCATGGTCAACGGGTCTTAGTATCGCGAGTTGGTTTCCGCGGTCTCACTCGACGGGGCACTCGCTGGTTCAACCCGGGGAGAATTGTGAACGGTTTACGCTGCGTTTGCCTGAGGAAGTGCGGAACGAGCTTATGCTGAGTCGCACCAAGAGTTGCGGCGTGAGCGTGACGTTCACGCGCGAGAATAGTGGAAGGAGGGGTTACAGGGCAAGGAGCCTTGGTAGCAGCCTCAGCCCTCACGTGACAAGAAACAGCACCAGTCCTCACGTGAGGTGGTGGTTTTCTCGGCCACGCTCGATTAAGGATGATGTCGGGGAACGGTCTTCGGATCGGTTATTCTCCACGACAAGGGATATTAGTGAGGTTTAG

Predicted protein sequences of Glyma04g10610

Limit To All Plant Sequences

>Glyma04g10610.1   sequence type=predicted peptide   gene model=Glyma04g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTFTHSIFHHDLLFLFYFFLLTEFPPQATAQPPNTLTPPPQQDRFTRLKFDKSMAIVLLILVVVFFILGFLSVYTRQCAERRMGGRFDLSILISRRQRGLGREVIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEDETLRFIPNCSHVFHSDCIDAWLANHSTCPVCRANLTSKPDDRCSAPIQNPDPEQPVLTSSTRPETVGADLLSQNRTPPRPWSTGLSIASWFPRSHSTGHSLVQPGENCERFTLRLPEEVRNELMLSRTKSCGVSVTFTRENSGRRGYRARSLGSSLSPHVTRNSTSPHVRWWFSRPRSIKDDVGERSSDRLFSTTRDISEV*

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