Glyma04g10560 - SoyBase

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Report for Sequence Feature Glyma04g10560

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8761025
stop:	8766010
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65380	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr5:26123241-26126352 REVERSE LENGTH=486	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0009835	GO-bp	Annotation by Michelle Graham. GO Biological Process: fruit ripening	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF50	Panther	DNA DAMAGE-INDUCIBLE PROTEIN	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_G7J4H4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7J4H4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JVA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JVA0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10560

Paralog	Evidence	Comments
Glyma06g10440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g097700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10560

Limit To All Plant Sequences

>Glyma04g10560.2   sequence type=CDS   gene model=Glyma04g10560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTACATTACCCAGACAACGTCGGCTATGGATACCAGTTGTCAACAAAAGGGATTTTTTACTTTTCTCCCTCAAAATATCACTAAAGCACCGCATTATTGTTGTCCAGTAATCGACAACCTGCGAAGCGAAGCAAAACACATGGGAAATATTCTGAATGAAGGAGAGCATGAGCATCCTCTGATAAAGTCAAAGCTGCCACCACAACCACACGGATCCAACAATCACTCTCTCTTCCAACGATCATGTTCCGAATCCAAGAAGCTATGGCACATCGCTGCCCCCTCCATCTTCACCCGCCTCGCCATGTTCTCCATCACCGTCGTCACCCAGTCCTTAGCCGGCCACCTCGGCGATCTCGACCTCGCCGCCATTTCCATCGCCTGCACCGTCCTCATCTCCATCACCTTCGGTTTCTTGTTGGGTATGGCGAGTGCGCTTGAGACACTATGCGGGCAGGCGTACGGCGCCGGACAACAGCGCATATTGGGCGTTTATTTGCAACGCTCGTGGGTTGTTCTGTTCCTGTCTTCCATTCTGTTGTTGCCGGTGTTCATTTTTGCGACGCCGGTGTTGAAGCTAATAGGGCAGCCCGTCGCGGTGGCGGAGCAGGCGGGGCTGGTGGCGGTTTGGTTGATCCCATTGCACCTGAGCTTCCCGTTCCAGTTCACTTTGCAGCGGTTCCTGCAGTGCCAGTTGAAGACCGGCATCATTGCTTGGGTTTCAGGGGTGGCTCTTGCGGTTCACGTGTTAGTGAGTTGGGTTTTTGTTTATAGGATGAGAATTGGGATTGTTGGCACTGCTCTTTCCATTGGTTTCTCGTGGTGGCTCTCTGTTTTGGGAATGCTCGGGTATACACTCTTTGGTGGTTGCCCTCGCTCGTGGACTGGTTTTTCTGTTGAAGCTTTTGTTGGCCTTTGGGAATTCTTCAAACTTTCTTTGGCTTCTGGGGTCATGCTTGCGTTAGAGAATTTCTATTACAGACTGTTGCTTATAGTTTCTGGATATATGCATAACACTGAGATTGCAATTGATGCTCTTTCCGTTTGTGTGACTATTTATGGTTGGGAGTCCATGATACCACTAGCATTTTTGGGCGCAACCGGGGTGCGTGTAGCAAATGAGCTTGGTGCAGGCAATGCAAAAGGTGCAAGATTTGCAACTGTGGTTTCTGTGGTAACTACTTTATTTGTGGGATTTATATTTTGGTTGGTAATTGTGTCCTTCAACAAGAATCTTGCCTTGATCTTTACATCGAGCTCTTCCGTTATCCAAATGGTCAATGAGCTGGCAATGTTGTTAGCTTTTACTGTTCTTCTTAATTGCATTCAACCAGTTCTTTCAGGGGTGGCAGTTGGGTCTGGTCGTCAAGCAGTAGTGGCTTATATAAACATTGGCAGTTACTACTTGATTGGAATACCTCTTGGGGTTCTCCTCGGCTGGTTGCTTCCTTCGGGTATTGGTATGTGGACTGGAATGATGAGTGGAACAGTGGTTCAAACATTGATCTTGGCTATTATTACGATGAGATATGATTGGGAAAAAGAGGTACAGAAAGCCCAAATTCTTGTTGAAGAGGAAGCAACATTCAACGACCAATAA

Predicted protein sequences of Glyma04g10560

Limit To All Plant Sequences

>Glyma04g10560.2   sequence type=predicted peptide   gene model=Glyma04g10560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFYITQTTSAMDTSCQQKGFFTFLPQNITKAPHYCCPVIDNLRSEAKHMGNILNEGEHEHPLIKSKLPPQPHGSNNHSLFQRSCSESKKLWHIAAPSIFTRLAMFSITVVTQSLAGHLGDLDLAAISIACTVLISITFGFLLGMASALETLCGQAYGAGQQRILGVYLQRSWVVLFLSSILLLPVFIFATPVLKLIGQPVAVAEQAGLVAVWLIPLHLSFPFQFTLQRFLQCQLKTGIIAWVSGVALAVHVLVSWVFVYRMRIGIVGTALSIGFSWWLSVLGMLGYTLFGGCPRSWTGFSVEAFVGLWEFFKLSLASGVMLALENFYYRLLLIVSGYMHNTEIAIDALSVCVTIYGWESMIPLAFLGATGVRVANELGAGNAKGARFATVVSVVTTLFVGFIFWLVIVSFNKNLALIFTSSSSVIQMVNELAMLLAFTVLLNCIQPVLSGVAVGSGRQAVVAYINIGSYYLIGIPLGVLLGWLLPSGIGMWTGMMSGTVVQTLILAIITMRYDWEKEVQKAQILVEEEATFNDQ*

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