Glyma04g10510 - SoyBase

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Report for Sequence Feature Glyma04g10510

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8725073
stop:	8727209
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14600	AT	Annotation by Michelle Graham. TAIR10: Target SNARE coiled-coil domain protein \| chr4:8376562-8378078 FORWARD LENGTH=137	SoyBase	E_val: 1.00E-46	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12791	Panther	GOLGI SNARE BET1-RELATED	JGI		ISS
PTHR12791:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7KBG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like protein n=1 Tax=Medicago truncatula RepID=G7KBG1_MEDTR	SoyBase	E_val: 1.00E-51	ISS
UniRef100_I1K9T6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T6_SOYBN	SoyBase	E_val: 1.00E-66	ISS

Expression Patterns of Glyma04g10510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10510

Paralog	Evidence	Comments
Glyma06g10370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g097000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g10510

Limit To All Plant Sequences

>Glyma04g10510.2   sequence type=transcript   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCCTCTGCTGTAAATGAGAGCATGCATTGGGACATAATGGTAACTTGCAATTTGCAATAAATTGAATGCGTTCACGAAACCTTGGCTTTCAAGTTGAAATGAGAATTGTGTGGAACTCATTTTTCCCCATTTTGTGAAATTCAATTCAATTCCAAGGGTTTCCATTTCAATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAGAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGTAATTGATCAGTCATTGGCACATCTCCTTTTCGGCAAGAGATTATTCAACTGTCTATTAATACCTTTGGTTGCTGTTTCAATACAGAAAATGGTAATGATAAAAGCTCAAGCCGGGGTGAAAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACCATATTGTTCATGTGGTTGTTTTTGCATTAGTCTGCTTCTTTATAGTATACTTCCGGTCAAAGATGTCCGGCCAATGATGGCTCATAGTTGAAAGATTTTTATTCAGGGCCTTCTTCGGATGACTCACTACGATGCCTAATCTTGTACAGAAAAGCTACACTTCCTGTTGCAGTTACAGTTAAAAATTCTTCGATTTCAAAGTTATGTGACTTGGTCGAAGCAGTAGTTTTGTGTAATACAAAGGATAACTCGCTTGTTTAATAGACTGCAAAATCCTCTTTTCTCTTAAAACTATCATGTGAATATCTGATAAATGTAGTAGTTAATAGCATCCTTGAACTTTACTCAGTAAATGGCACAATAGATGAAGCCTCAAAATGGTGAAGTTATCTGGTTTGTTTTTGTTGCCGAGTGAATTGTGATGCTAATAGTAAATGACATTAATATTCACTGGATTCATGTCTACTCAAAGCTATTACGTGTGTTTGATTCTGCGTCGGTATAGGACCAAATTCACGTCCAATTGTCAATTTATGCAAAAGCTTGTATTTATT

>Glyma04g10510.3   sequence type=transcript   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGGTACAAAATGGTAATGATAAAAGCTCAAGCCGGGGTGAAAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACCATATTGTTCATGTGGTTGTTTTTGCATTAGTCTGCTTCTTTATAGTATACTTCCGGTCAAAGATGTCCGGCCAATGA

>Glyma04g10510.4   sequence type=transcript   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTCCTCTGCTGTAAATGAGAGCATGCATTGGGACATAATGGTAACTTGCAATTTGCAATAAATTGAATGCGTTCACGAAACCTTGGCTTTCAAGTTGAAATGAGAATTGTGTGGAACTCATTTTTCCCCATTTTGTGAAATTCAATTCAATTCCAAGGGTTTCCATTTCAATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAGAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGAAAATGGTAATGATAAAAGCTCAAGCCGGGGTGAAAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACCATATTGTTCATGTGGTTGTTTTTGCATTAGTCTGCTTCTTTATAGTATACTTCCGGTCAAAGATGTCCGGCCAATGATGGCTCATAGTTGAAAGATTTTTATTCAGGGCCTTCTTCGGATGACTCACTACGATGCCTAATCTTGTACAGAAAAGCTACACTTCCTGTTGCAGTTACAGTTAAAAATTCTTCGATTTCAAAGTTATGTGACTTGGTCGAAGCAGTAGTTTTGTGTAATACAAAGGATAACTCGCTTGTTTAATAGACTGCAAAATCCTCTTTTCTCTTAAAACTATCATGTGAATATCTGATAAATGTAGTAGTTAATAGCATCCTTGAACTTTACTCAGTAAATGGCACAATAGATGAAGCCTCAAAATGGTGAAGTTATCTGGTTTGTTTTTGTTGCCGAGTGAATTGTGATGCTAATAGTAAATGACATTAATATTCACTGGATTCATGTCTACTCAAAGCTATTACGTGTGTTTGATTCTGCGTCGGTATAGGACCAAATTCACGTCCAATTGTCAATTTATGCAAAAGCTTGTATTTATT

Coding sequences of Glyma04g10510

Limit To All Plant Sequences

>Glyma04g10510.1   sequence type=CDS   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAGAAAATTGAAAAATGTATTCCACTATTGTCCCCACCTTTTTGTTTCTCTTCCTATTTTTTCTTTTAATTGTCTTTTTCTTTTTTGA

>Glyma04g10510.2   sequence type=CDS   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAGAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGTAA

>Glyma04g10510.3   sequence type=CDS   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGGTACAAAATGGTAATGATAAAAGCTCAAGCCGGGGTGAAAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACCATATTGTTCATGTGGTTGTTTTTGCATTAGTCTGCTTCTTTATAGTATACTTCCGGTCAAAGATGTCCGGCCAATGA

>Glyma04g10510.4   sequence type=CDS   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCAATTCTCACAGAGGTGCCTCCTTTTACGGCAATGCTGCTCCTTACCGATCCAGAGAGGGGCTTAGCACCCGACCCGTTGCATCCTCCGATGAAATCCAATTGCATATCGATCCCGGCGTCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAGAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAGAGAGATTTTCTGGAACAAGTGAAAATGGTAATGATAAAAGCTCAAGCCGGGGTGAAAAGAATAACTTAA

Predicted protein sequences of Glyma04g10510

Limit To All Plant Sequences

>Glyma04g10510.1   sequence type=predicted peptide   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSHRGASFYGNAAPYRSREGLSTRPVASSDEIQLHIDPGVDFDDEITGLRGQVRKLKNVFHYCPHLFVSLPIFSFNCLFLF*

>Glyma04g10510.2   sequence type=predicted peptide   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSHRGASFYGNAAPYRSREGLSTRPVASSDEIQLHIDPGVDFDDEITGLRGQVRKLKNVAEEIGSEVKFQRDFLEQV*

>Glyma04g10510.3   sequence type=predicted peptide   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSHRGASFYGNAAPYRSREGLSTRPVASSDEIQLHIDPGVDFDDEITGLRGQVAEEIGSEVKFQRDFLEQVVQNGNDKSSSRGEKNNLRRLNKSIVKNGSNHIVHVVVFALVCFFIVYFRSKMSGQ*

>Glyma04g10510.4   sequence type=predicted peptide   gene model=Glyma04g10510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNSHRGASFYGNAAPYRSREGLSTRPVASSDEIQLHIDPGVDFDDEITGLRGQVRKLKNVAEEIGSEVKFQRDFLEQVKMVMIKAQAGVKRIT*

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