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Report for Sequence Feature Glyma04g10451

Feature Type:gene_model
Chromosome:Gm04
Start:8670881
stop:8701308
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24460AT Annotation by Michelle Graham. TAIR10: CRT (chloroquine-resistance transporter)-like transporter 2 | chr4:12642888-12645310 FORWARD LENGTH=431 SoyBaseE_val: 1.00E-135ISS
GO:0002229GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes SoyBaseN/AISS
GO:0034635GO-bp Annotation by Michelle Graham. GO Biological Process: glutathione transport SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
KOG3912 KOG Predicted integral membrane protein JGI ISS
PF08449PFAM UAA transporter family JGI ISS
UniRef100_I1K9T3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2QQ06UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQ06_ORYSJ SoyBaseE_val: 2.00E-133ISS

Expression Patterns of Glyma04g10451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g10451 not represented in the dataset
Glyma04g10451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10451
ParalogEvidenceComments
Glyma06g10350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g096800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g10451
>Glyma04g10451.2   sequence type=transcript   gene model=Glyma04g10451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATTAATTTAACCTCTTGTTATTTCATTTGTTAGACTTAGAAGGGATCCAACTTGGTTGAAAGTGAGCAATGTCGTTCGCAGTGGCATTGTGTACAACGTCGTCGTTCTTCCCTTCCCGTTTTGAAATTCGCAATCCAAAGCAGCTTCAGCTTCCACCTCTCCTTTCAATGTCACTGTCGTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCATATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAACTCTTCATCCAAACTCGTCTTATTGAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCAATTCCGAAATTGCGTTTTGTGGCCATTGGGTTTCTAGAAGCCTTGGGCTTGGTTTCCGGAATGTCAGCTGCAGCCGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGATACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGCTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCTTTGATGATAATCTCATGTTCCTTTCAAGCTTTGGCTTCTGTAATCAAGGAGTATATTTTCATTGATTCTGCTACTCGATTAAAGCACAAGTCACTGGACATATTTGTGGTCAATTCTTTCGGATCTGGGTTTCAGGCTCTTTTCGTACTTCTGTCTCTACCTATACTTTCTAACTTGAGAGGTATACCATTTGATCAACTTCCTTCATATTTTAAAAGCGGTGCTGGTTGCTTTCTAAACCTTGGAGCCGATAATCCAAATTGTTATGGCGCTCCCTTGCTTCCACTACTTTACGTAATTATCAACTTGGCATTCAACATATCCCTGCTTAATGCAGTAAAAACTTCGTCTGCAGTTGTGGCTTCTCTTCTGTGCCAATTTCTGTTTATATTCTTTCCCTTCCATTACCATATCTTCCCGAGGGAACAAGCCTGAGCCCATTTTTTTTGTTTGGCGGTGCAATTCTTCTCTGTGGTCTTTTTCTGTACAACACAACGCGGCCTGTAAGGAACAGTTCTGAAGATGACTGAAACAGTTGCAGTTCATGAAACCAATGCTGAGGAGAAACTATCGGCTAGGAACCTGCCAAAAAAGAATGTCAACCTTGAGGCATTCTTGACCGCGGTGAAATATATTTTCTCCGATCACCTCCAAATTATACACATTCACTATCATCGTGATTATTTTTTTGAGCAGAAAATTTGTTCAGTTTTCACGTTTAAGGGTCGCTTAGCTGCTTTATGATGGTTGACTTCGTCATTCTGCCACTGGATCATTGTAACTCAAGATTGTGCATATATCTCTGATGACTTGTTCAAGTATATTTTCATGTACATTAATAAAAGCAGACAAATGTAATTGGCAGAATTGCAAGTGCAGAATTTTTAAGTTGGGTGATCATATCTTTTGGCTATTTTACTAAATGGATTACAAGAGTTTGGGGATGAGATATTTGGAGTTGATTAGTTTGCAAGAAGTGTACAAGATCGAAATCGTCGCATTGCCTCACTCTTCCTGGCAGGCAGCATTATAAAATCATGGAAA
Coding sequences of Glyma04g10451
>Glyma04g10451.1   sequence type=CDS   gene model=Glyma04g10451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTCGCAGTGGCATTGTGTACAACGTCGTCGTTCTTCCCTTCCCGTTTTGAAATTCGCAATCCAAAGCAGCTTCAGCTTCCACCTCTCCTTTCAATGTCACTGTCGTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCATATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAACTCTTCATCCAAACTCGTCTTATTGAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCAATTCCGAAATTGCGTTTTGTGGCCATTGGGTTTCTAGAAGCCTTGGGCTTGGTTTCCGGAATGTCAGCTGCAGCCGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGATACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGCTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCTTTGATGATAATCTCATGTTCCTTTCAAGCTTTGGCTTCTGTAATCAAGGAGTATATTTTCATTGATTCTGCTACTCGATTAAAGCACAAGTCACTGGACATATTTGTGGTCAATTCTTTCGGATCTGGGTTTCAGGCTCTTTTCGTACTTCTGTCTCTACCTATACTTTCTAACTTGAGAGGTATACCATTTGATCAACTTCCTTCATATTTTAAAAGCGGTGCTGGTTGCTTTCTAAACCTTGGAGCCGATAATCCAAATTGTTATGGCGCTCCCTTGCTTCCACTACTTTACGTAATTATCAACTTGGCATTCAACATATCCCTGCTTAATGCAGTAAAAACTTCGTCTGCAGTTGTGGCTTCTCTTCTGGTAATGTTGTCAGTGCCAATTTCTGTTTATATTCTTTCCCTTCCATTACCATATCTTCCCGAGGGAACAAGCCTGAGCCCATTTTTTTTGTTTGGCGGTGCAATTCTTCTCTGTGGTCTTTTTCTGTACAACACAACGCGGCCTGTAAGGAACAGTTCTGAAGATGACTGA

>Glyma04g10451.2   sequence type=CDS   gene model=Glyma04g10451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTCGCAGTGGCATTGTGTACAACGTCGTCGTTCTTCCCTTCCCGTTTTGAAATTCGCAATCCAAAGCAGCTTCAGCTTCCACCTCTCCTTTCAATGTCACTGTCGTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCATATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAACTCTTCATCCAAACTCGTCTTATTGAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCAATTCCGAAATTGCGTTTTGTGGCCATTGGGTTTCTAGAAGCCTTGGGCTTGGTTTCCGGAATGTCAGCTGCAGCCGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGATACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGCTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCTTTGATGATAATCTCATGTTCCTTTCAAGCTTTGGCTTCTGTAATCAAGGAGTATATTTTCATTGATTCTGCTACTCGATTAAAGCACAAGTCACTGGACATATTTGTGGTCAATTCTTTCGGATCTGGGTTTCAGGCTCTTTTCGTACTTCTGTCTCTACCTATACTTTCTAACTTGAGAGGTATACCATTTGATCAACTTCCTTCATATTTTAAAAGCGGTGCTGGTTGCTTTCTAAACCTTGGAGCCGATAATCCAAATTGTTATGGCGCTCCCTTGCTTCCACTACTTTACGTAATTATCAACTTGGCATTCAACATATCCCTGCTTAATGCAGTAAAAACTTCGTCTGCAGTTGTGGCTTCTCTTCTGTGCCAATTTCTGTTTATATTCTTTCCCTTCCATTACCATATCTTCCCGAGGGAACAAGCCTGA
Predicted protein sequences of Glyma04g10451
>Glyma04g10451.1   sequence type=predicted peptide   gene model=Glyma04g10451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFAVALCTTSSFFPSRFEIRNPKQLQLPPLLSMSLSSKLPLHFSGNAIFNRNHPTMFKIRASNSSSKLVLLSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQALASVIKEYIFIDSATRLKHKSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFDQLPSYFKSGAGCFLNLGADNPNCYGAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLVMLSVPISVYILSLPLPYLPEGTSLSPFFLFGGAILLCGLFLYNTTRPVRNSSEDD*

>Glyma04g10451.2   sequence type=predicted peptide   gene model=Glyma04g10451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFAVALCTTSSFFPSRFEIRNPKQLQLPPLLSMSLSSKLPLHFSGNAIFNRNHPTMFKIRASNSSSKLVLLSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQALASVIKEYIFIDSATRLKHKSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFDQLPSYFKSGAGCFLNLGADNPNCYGAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLCQFLFIFFPFHYHIFPREQA*






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