Glyma04g10420 - SoyBase

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Report for Sequence Feature Glyma04g10420

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8657607
stop:	8670214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07840	AT	Annotation by Michelle Graham. TAIR10: Sas10/Utp3/C1D family \| chr1:2424603-2426425 FORWARD LENGTH=312	SoyBase	E_val: 1.00E-99	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3117	KOG	Protein involved in rRNA processing	JGI		ISS
PTHR13237	Panther	SOMETHING ABOUT SILENCING PROTEIN SAS10	JGI		ISS
PF04000	PFAM	Sas10/Utp3/C1D family	JGI		ISS
UniRef100_G7J4I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neuroguidin n=1 Tax=Medicago truncatula RepID=G7J4I5_MEDTR	SoyBase	E_val: 9.00E-164	ISS
UniRef100_I1JV90	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV90_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10420

Paralog	Evidence	Comments
Glyma06g10340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g096700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g10420

Limit To All Plant Sequences

>Glyma04g10420.3   sequence type=transcript   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGCTCCTCACAGTCACAGATTTTTATTTCATTTTTTTAACCAAGCCACGACTAACGTCTCTCTTTACCCGCTATCTCTGGCTTTGATTGTTAAAAATTGTGGTAAATCATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAAAGGAAGAAAATTTGGGTTTTGAGCTAAAGGGCTGAAATGCTCTCTGGAAAACAGACCACTTCATGCTGTTGTCGGAAGTAATGCTAGATTTAACGAAAACGACAGAGTTGGTGTTGGTGCTTTCCTCCGTGTTTGTTTGTAGATTTTAGTTACATTATTGTCTTTTTATTTATTTATTTACTTATTATTATTATTATTATAGGCTCGGGTGCTTAATTGGGTACGTGAATTTGAGATTTTCGCAGAGATGAAATGTGTTTTTTTTTTTGCTATTACAGATGTGCACCCATTTTTGCGATGCAAGTGGATTTTTTTAACCCACCTTTATATATTTAGGTGGAGTACAAATAGTATTAAACTTCATATTTAGTAGGATTACTGAATTAAGTTTACATTTGTCGTTTTCTTAGGGGTGAACATGTAGGCCACCGATTGGTTTTTCTGTACATGACCCAAGATATTCTCAAATTGGTGGTTCTCGATGATAATGACCCTTCAAAATTTTGTAAGAATACTGCAAACCTTATGCAGGAGATAATTTG

>Glyma04g10420.4   sequence type=transcript   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTGTCGTTTTAAATATTGTATTTGCGTTTTAGTTAAAATTCAGGCCCCCACTTTAGTTTTCCACTTTTCCTTTCATCCTTGAGACCTTGACACTTTCACTTTCTCGCATAACCCTTAAGGTGCCGCAGATACGGGCACAGCCTCCCTCCCTTGCGAGTCTTACACCGTCATAAGTCACGGTTGTCATCGGAGCTCTTGCGGTTGCTCCTCACAGTCACAGATTTTTATTTCATTTTTTTAACCAAGCCACGACTAACGTCTCTCTTTACCCGCTATCTCTGGCTTTGATTGTTAAAAATTGTGGTAAATCATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAAAGGAAGAAAATTTGGGTTTTGAGCTAAAGGGCTGAAATGCTCTCTGGAAAACAGACCACTTCATGCTGTTGTCGGAAGTAATGCTAGATTTAACGAAAACGACAGAGTTGGTGTTGGTGCTTTCCTCCGTGTTTGTTTGTAGATTTTAGTTACATTATTGTCTTTTTATTTATTTATTTACTTATTATTATTATTATTATAGGCTCGGGTGCTTAATTGGGTACGTGAATTTGAGATTTTCGCAGAGATGAAATGTGTTTTTTTTTTTGCTATTACAGATGTGCACCCATTTTTGCGATGCAAGTGGATTTTTTTAACCCACCTTTATATATTTAGGTGGAGTACAAATAGTATTAAACTTCATATTTAGTAGGATTACTGAATTAAGTTTACATTTGTCGTTTTCTTAGGGGTGAACATGTAGGCCACCGATTGGTTTTTCTGTACATGACCCAAGATATTCTCAAATTGGTGGTTCTCGATGATAATGACCCTTCAAAATTTTGTAAGAATACTGCAAACCTTATGCAGGAGATAATTTGTAAAAAAAG

Coding sequences of Glyma04g10420

Limit To All Plant Sequences

>Glyma04g10420.2   sequence type=CDS   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

>Glyma04g10420.3   sequence type=CDS   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

>Glyma04g10420.4   sequence type=CDS   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

Predicted protein sequences of Glyma04g10420

Limit To All Plant Sequences

>Glyma04g10420.2   sequence type=predicted peptide   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIANHNDDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLMQASENAIRSDILNKEPVASNKSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRKRKH*

>Glyma04g10420.3   sequence type=predicted peptide   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIANHNDDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLMQASENAIRSDILNKEPVASNKSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRKRKH*

>Glyma04g10420.4   sequence type=predicted peptide   gene model=Glyma04g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENIANHNDDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLMQASENAIRSDILNKEPVASNKSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRKRKH*

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