Glyma04g10375 - SoyBase

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Report for Sequence Feature Glyma04g10375

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8586594
stop:	8599133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10375

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24450	AT	Annotation by Michelle Graham. TAIR10: phosphoglucan, water dikinase \| chr4:12635761-12642631 FORWARD LENGTH=1278	SoyBase	E_val: 9.00E-104	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
UniRef100_B9SMZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-glucan water dikinase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SMZ2_RICCO	SoyBase	E_val: 4.00E-109	ISS
UniRef100_B9SMZ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Alpha-glucan water dikinase, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SMZ2_RICCO	SoyBase	E_val: 4.00E-109	ISS

Expression Patterns of Glyma04g10375

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g10375 not represented in the dataset	Glyma04g10375 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10375

Paralog	Evidence	Comments
Glyma06g10311	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10375 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g096500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10375

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g10375

Limit To All Plant Sequences

>Glyma04g10375.2   sequence type=transcript   gene model=Glyma04g10375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTCGTTTTCGTTGCGAACAAAAACATAAACAGTAGCTATGGCGCCATCTGGGTCAAGCAACAATGCCATGGCTCCTCGTGTTCTTCATTTTGATCTAATTGAAGGAATGCAATTTGCGATTATTATATCCGGATCATTGGAGAATCGCAACGTGCGAATTGAATTTCAACTCAAAAATTGTACAGGGACTTGGATCCTTCACTGGGGTTTTGTCTTCAATGGGAATAAGAATTGGTTCATTCCAGCTGGTAATTCTTCTGGAGCAAAATCTTACAAACAGGGTGCATTGCAGTCACAATTTACAAAGAATGGACAGATATACATGCTTATAATTGAGTTGCGGGACCCTAGCATACATGCCATTGAGTTTGTTCTGAAAGATGGAAATCACGATAGATGGTTGAAATTGAACCACAGCAATTTTCGAATAGAGATACCTGCAAGTGATGCTCCTGGAATATCTCATTCTGATTCTAGAATACCAAAAAATCTGATAGAACAGAAGGCTTATTCACGGTGGGAGGGAAGGCCTATAAGTTTGCCCCAGCAACAGAAGCAAAATTATGATATTGCATTGAGAGAGCTCCCAAATCACTTATCAAAAGGAATAACCTTGACCGAGTCACGGAATAGCTATCTAACTGGAGGAATAAAACCTGTGAATGATAACAGAGATAAACTCAGAAGTGGTATCCAATATTCCTACCTTAATATTGAAGACTGGTTGCAAAAGCATTCTGAAGGGCATGCCAAAGGCACCATATCAACAGCAGCTCTTATAGAGAATTTTATAGGGGGAACAGATGTATTGTCAAAGCAAATATATCATGTTCATAACTATGAGATTATGGTATTTTCAAAAACCATTAATGGCAACAACCACATTTTCATTGCTGCAAACACAAAAGGTACTACGGTGCTTCACTGGGGTGTATGCAAGTCCTCTCCAAGTGAGTGGTTGGTGCCACCACAAGAGATATGGCCAGAAAACTCAAAACTGGTTTCTGGAGCATGTCAAAGCTATTTTAGAGATAACTTTGCAGGGAATAGATCCTTTCAGATTGTAGATGTCAATTTGCAGAAAAGGAATTTTGCTGGTATTCAATTTGTCATCTGGACAGGTGGATATTGGATTAAACACAATGGGGAAAACTTCTTCGCGGAGCTCAAACCAATCAATCCAACTGAAAAGTTAGAATGGAGTCCTACCTAGAGGCATTGGATTTCTGGGAAGCTGTGGAAGAGGATTACAATGTTCCTTCGCTGCTAGACAATCCCACCATGGCTCAGATAAAAAATCACAAGGAAAACCAAGAAAGCAAAAGCAAAGACTTGTTTGTTTGCTGGTGTTTTAAAGATTGTCTTCACTAGAATCATGACCATCAAAACACCAAAAGCAATATGGGATTATTTAAAGGAAGAATATGCAAGGGATGAGAGGATTCGAAGCATGCAAGTGCTGAACTTGATGAGGGAATTTGAGCTCCAAAGGATGAAAGAGTCTGAGCCAATTAAAGAATACTCAAATAGATTGCTTGGCATTGCTAATAAGGTTAGATTATTGGGCACTGAATTTGCTGATTCCAGAATTGTATAAAAAATTCTGGTTATAGTGCCTAAGAGA

Coding sequences of Glyma04g10375

Limit To All Plant Sequences

>Glyma04g10375.1   sequence type=CDS   gene model=Glyma04g10375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCATCTGGGTCAAGCAACAATGCCATGGCTCCTCGTGTTCTTCATTTTGATCTAATTGAAGGAATGCAATTTGCGATTATTATATCCGGATCATTGGAGAATCGCAACGTGCGAATTGAATTTCAACTCAAAAATTGTACAGGGACTTGGATCCTTCACTGGGGTTTTGTCTTCAATGGGAATAAGAATTGGTTCATTCCAGCTGGTAATTCTTCTGGAGCAAAATCTTACAAACAGGGTGCATTGCAGTCACAATTTACAAAGAATGGACAGATATACATGCTTATAATTGAGTTGCGGGACCCTAGCATACATGCCATTGAGTTTGTTCTGAAAGATGGAAATCACGATAGATGGTTGAAATTGAACCACAGCAATTTTCGAATAGAGATACCTGCAAGTGATGCTCCTGGAATATCTCATTCTGATTCTAGAATACCAAAAAATCTGATAGAACAGAAGGCTTATTCACGGTGGGAGGGAAGGCCTATAAGTTTGCCCCAGCAACAGAAGCAAAATTATGATATTGCATTGAGAGAGCTCCCAAATCACTTATCAAAAGGAATAACCTTGACCGAGTCACGGAATAGCTATCTAACTGGAGGAATAAAACCTGTGAATGATAACAGAGATAAACTCAGAAGTGGTATCCAATATTCCTACCTTAATATTGAAGACTGGTTGCAAAAGCATTCTGAAGGGCATGCCAAAGGCACCATATCAACAGCAGCTCTTATAGAGAATTTTATAGGGGGAACAGATGTATTGTCAAAGCAAATATATCATGTTCATAACTATGAGATTATGGTATTTTCAAAAACCATTAATGGCAACAACCACATTTTCATTGCTGCAAACACAAAAGGTACTACGGTGCTTCACTGGGGTGTATGCAAGTCCTCTCCAAGTGAGTGGTTGGTGCCACCACAAGAGATATGGCCAGAAAACTCAAAACTGGTTTCTGGAGCATGTCAAAGCTATTTTAGAGATAACTTTGCAGGGAATAGATCCTTTCAGATTGTAGATGTCAATTTGCAGAAAAGGAATTTTGCTGGTATTCAATTTGTCATCTGGACAGGTGGATATTGGATTAAACACAATGGGGAAAACTTCTTCGCGGAGCTCAAACCAATCAATCCAACTGAAAAGGTCATTTTCATATTTCTTCTTTAA

>Glyma04g10375.2   sequence type=CDS   gene model=Glyma04g10375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCATCTGGGTCAAGCAACAATGCCATGGCTCCTCGTGTTCTTCATTTTGATCTAATTGAAGGAATGCAATTTGCGATTATTATATCCGGATCATTGGAGAATCGCAACGTGCGAATTGAATTTCAACTCAAAAATTGTACAGGGACTTGGATCCTTCACTGGGGTTTTGTCTTCAATGGGAATAAGAATTGGTTCATTCCAGCTGGTAATTCTTCTGGAGCAAAATCTTACAAACAGGGTGCATTGCAGTCACAATTTACAAAGAATGGACAGATATACATGCTTATAATTGAGTTGCGGGACCCTAGCATACATGCCATTGAGTTTGTTCTGAAAGATGGAAATCACGATAGATGGTTGAAATTGAACCACAGCAATTTTCGAATAGAGATACCTGCAAGTGATGCTCCTGGAATATCTCATTCTGATTCTAGAATACCAAAAAATCTGATAGAACAGAAGGCTTATTCACGGTGGGAGGGAAGGCCTATAAGTTTGCCCCAGCAACAGAAGCAAAATTATGATATTGCATTGAGAGAGCTCCCAAATCACTTATCAAAAGGAATAACCTTGACCGAGTCACGGAATAGCTATCTAACTGGAGGAATAAAACCTGTGAATGATAACAGAGATAAACTCAGAAGTGGTATCCAATATTCCTACCTTAATATTGAAGACTGGTTGCAAAAGCATTCTGAAGGGCATGCCAAAGGCACCATATCAACAGCAGCTCTTATAGAGAATTTTATAGGGGGAACAGATGTATTGTCAAAGCAAATATATCATGTTCATAACTATGAGATTATGGTATTTTCAAAAACCATTAATGGCAACAACCACATTTTCATTGCTGCAAACACAAAAGGTACTACGGTGCTTCACTGGGGTGTATGCAAGTCCTCTCCAAGTGAGTGGTTGGTGCCACCACAAGAGATATGGCCAGAAAACTCAAAACTGGTTTCTGGAGCATGTCAAAGCTATTTTAGAGATAACTTTGCAGGGAATAGATCCTTTCAGATTGTAGATGTCAATTTGCAGAAAAGGAATTTTGCTGGTATTCAATTTGTCATCTGGACAGGTGGATATTGGATTAAACACAATGGGGAAAACTTCTTCGCGGAGCTCAAACCAATCAATCCAACTGAAAAGTTAGAATGGAGTCCTACCTAG

Predicted protein sequences of Glyma04g10375

Limit To All Plant Sequences

>Glyma04g10375.1   sequence type=predicted peptide   gene model=Glyma04g10375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSGSSNNAMAPRVLHFDLIEGMQFAIIISGSLENRNVRIEFQLKNCTGTWILHWGFVFNGNKNWFIPAGNSSGAKSYKQGALQSQFTKNGQIYMLIIELRDPSIHAIEFVLKDGNHDRWLKLNHSNFRIEIPASDAPGISHSDSRIPKNLIEQKAYSRWEGRPISLPQQQKQNYDIALRELPNHLSKGITLTESRNSYLTGGIKPVNDNRDKLRSGIQYSYLNIEDWLQKHSEGHAKGTISTAALIENFIGGTDVLSKQIYHVHNYEIMVFSKTINGNNHIFIAANTKGTTVLHWGVCKSSPSEWLVPPQEIWPENSKLVSGACQSYFRDNFAGNRSFQIVDVNLQKRNFAGIQFVIWTGGYWIKHNGENFFAELKPINPTEKVIFIFLL*

>Glyma04g10375.2   sequence type=predicted peptide   gene model=Glyma04g10375   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSGSSNNAMAPRVLHFDLIEGMQFAIIISGSLENRNVRIEFQLKNCTGTWILHWGFVFNGNKNWFIPAGNSSGAKSYKQGALQSQFTKNGQIYMLIIELRDPSIHAIEFVLKDGNHDRWLKLNHSNFRIEIPASDAPGISHSDSRIPKNLIEQKAYSRWEGRPISLPQQQKQNYDIALRELPNHLSKGITLTESRNSYLTGGIKPVNDNRDKLRSGIQYSYLNIEDWLQKHSEGHAKGTISTAALIENFIGGTDVLSKQIYHVHNYEIMVFSKTINGNNHIFIAANTKGTTVLHWGVCKSSPSEWLVPPQEIWPENSKLVSGACQSYFRDNFAGNRSFQIVDVNLQKRNFAGIQFVIWTGGYWIKHNGENFFAELKPINPTEKLEWSPT*

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