Glyma04g10340 - SoyBase

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Report for Sequence Feature Glyma04g10340

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8563510
stop:	8577349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21175	AT	Annotation by Michelle Graham. TAIR10: ZIM-like 1 \| chr3:7422832-7424598 FORWARD LENGTH=295	SoyBase	E_val: 6.00E-71	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00320	PFAM	GATA zinc finger	JGI		ISS
PF06200	PFAM	tify domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7J4K2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator-like PRR37 n=1 Tax=Medicago truncatula RepID=G7J4K2_MEDTR	SoyBase	E_val: 1.00E-144	ISS
UniRef100_I1JV87	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV87_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10340

Paralog	Evidence	Comments
Glyma06g10290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g096300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10340

Limit To All Plant Sequences

>Glyma04g10340.1   sequence type=CDS   gene model=Glyma04g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACCGTGAATCCGCAGCCTCTGCAGTTCGAGGACCCAGCGATACCCGTCGACGATGACGATGACGACGACGACGACGGTGGTGATGATGATGCTATGGATGAGTTGGAGGATGCAAATGTTAACTCAGTGAACGTTACTAATGCCGCGAGTGTAAATCATGAAGCGGTAGTGGCTATGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGAGAAGTTTATGTCTTTCCCGCTGTCACTCCTCAGAAGGTGCAAGCTGTCTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAGGTGTGCCAGCAGTTGAACCACCATTTGATCAAAGTAACAGGGACATGGGTGATACTCCAAAGCGTTCAAACCTTTCACGAAGAATAGCATCCTTGGTCAGGTTCCGCGAGAAACGCAAGGAAAGATGTTTTGACAAGAAAATTAGGTATTCCGTCAGAAAAGAGGTAGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCTTCCTTGAAGGAAAGCCCAGGTTCATCTAATTGGGATTCTGCACAGAGTTCTGGTCAAGTTGGCACTTCTCATTCTGAATCTGTACGTAGATGTCACCATTGTGGTGTCGGTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCTAACAAGGGCACACTCAGAGATCTCAGTAAGGGTGGAAGGAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTATTGATGTCAAGCCTACTTCTGTTCTTGAAGGGGAATTGCCTGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCCTTCCAAGTCCAATGCAGCGGATGGTTCTAGTAATCATGCTGTAAACCCCAGTGATGAGGAATTGCCTGAAACTGCAGAACACTTTACGAACGTTCTGCCACTGGGAATTGGTCATTCTTCAACAAATGACAGTGAACAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCAGGAAACTTTGATTAG

Predicted protein sequences of Glyma04g10340

Limit To All Plant Sequences

>Glyma04g10340.1   sequence type=predicted peptide   gene model=Glyma04g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVNPQPLQFEDPAIPVDDDDDDDDDGGDDDAMDELEDANVNSVNVTNAASVNHEAVVAMPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQAGVPAVEPPFDQSNRDMGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASLKESPGSSNWDSAQSSGQVGTSHSESVRRCHHCGVGENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPIDVKPTSVLEGELPGIHDEQGSSEDPSKSNAADGSSNHAVNPSDEELPETAEHFTNVLPLGIGHSSTNDSEQEPLVELSNPSDTDIDIPGNFD*

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