Glyma04g10260 - SoyBase

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Report for Sequence Feature Glyma04g10260

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8465019
stop:	8466314
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65520	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:26189876-26190496 REVERSE LENGTH=206	SoyBase	E_val: 6.00E-38	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PTHR23083	Panther	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_B6SLI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TPR domain containing protein n=1 Tax=Zea mays RepID=B6SLI0_MAIZE	SoyBase	E_val: 4.00E-45	ISS
UniRef100_I1JV82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV82_SOYBN	SoyBase	E_val: 1.00E-155	ISS

Expression Patterns of Glyma04g10260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10260

Paralog	Evidence	Comments
Glyma06g10220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g095900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10260

Limit To All Plant Sequences

>Glyma04g10260.1   sequence type=CDS   gene model=Glyma04g10260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCCGACGAGAAGAAAGCAATGATCCGCGACGTAGCGCTACAAGTCGTTTTCATTTCCCTCACTATTTTCAGCTTCCTCTGGATGCACGGCCTCCCTCAAAACCTCTACGCCAAGCTCCGCCACCGTCCTCCAAACTCTCGCGCCGTCCAAGCCAAGCGCCACTTCGTCCAAGGCGCACAGCTCCTCGCCCAAGCCAGAAGATCCAAAAGCGCTTCCGCCGCAACCTCCCTCGCCAAACAGGCCCTAGCCGAGGCCGAGAAGGCCCTCGCGCTCGACCCCAAGGACGCCGCCTCGCACCTCCTCAAGTCCATGGCGCTCGACCTCCAGGGCTTCCGCACCAACGCGCTCGACGCGCTCGACGCCGCGTTGTCCCCTCTCGCCGCGGGGTCCCTCGCCGAGGAAGAGAGGGGCGACGCGCTGCTGAAGAGGGCGGAGCTCAAGATCGCGATGAGCGAGCGGCGCGTTGACTCGGTGCTGGCCGATTTGACCGAGTCGGTGAAGCTGAGTCCGCGAAACGCGAAGGCGTGGTGCATGCTGGGGGAGTGCTACGAAGGAAACAAAATGGGAGAAGAAGCGAAGAAGGCTTATAAAGAGGCTTTGGAGTTGGAGCCACAGTCGAATGTGGCTCAAGAAGCGCTCAGCAGGTTGGGATCATCGTAA

Predicted protein sequences of Glyma04g10260

Limit To All Plant Sequences

>Glyma04g10260.1   sequence type=predicted peptide   gene model=Glyma04g10260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEADEKKAMIRDVALQVVFISLTIFSFLWMHGLPQNLYAKLRHRPPNSRAVQAKRHFVQGAQLLAQARRSKSASAATSLAKQALAEAEKALALDPKDAASHLLKSMALDLQGFRTNALDALDAALSPLAAGSLAEEERGDALLKRAELKIAMSERRVDSVLADLTESVKLSPRNAKAWCMLGECYEGNKMGEEAKKAYKEALELEPQSNVAQEALSRLGSS*

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