Report for Sequence Feature Glyma04g10240
Feature Type: gene_model
Chromosome: Gm04
Start: 8458800
stop: 8464377
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g10240
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24490 AT
Annotation by Michelle Graham. TAIR10: RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678
SoyBase E_val: 0 ISS
GO:0018342 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein prenylation
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0008318 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein prenyltransferase activity
SoyBase N/A ISS
KOG0529
KOG
Protein geranylgeranyltransferase type II, alpha subunit
JGI ISS
PTHR11129 Panther
PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
JGI ISS
PTHR11129:SF2 Panther
PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT
JGI ISS
PF01239 PFAM
Protein prenyltransferase alpha subunit repeat
JGI ISS
UniRef100_G7J4K8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Medicago truncatula RepID=G7J4K8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233A0A8 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A0A8 related cluster n=1 Tax=unknown RepID=UPI000233A0A8
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g10240
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma04g10240
Paralog Evidence Comments
Glyma06g10210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g10240 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g095800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g10240
Coding sequences of Glyma04g10240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g10240.1 sequence type=CDS gene model=Glyma04g10240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCACGGTCGGCCTCGCAAAGCGTTGAAGCAAGAAGATGAAGCCGCTTCAGCAGCCAAAGCTGAAAAGCTTCGTTCACTCCAAGCTCAGTTCCTCGCCAATCACCACAATCACATTTATAGCAAGGAAGCGTTAGATGTGAGCGCGAAGCTTCTAGAAGTGAATCCAGAGTGCTACACAGCTTGGAATTACAGAAAGCTCGCCGTTCAACATCTTCTCTCTAACTCCGATTCCGATCCTCACTCTATCTTCGATGACGAGCTCAAACTCGTGGAGATTGCGCTGAGGAAGAATTTCAAGTCTTACGGCGCGTGGCATCATAGAAAATGGGTACTCAGCAAGGGGCATTCGTCCATAGACAACGAAATGCGCCTTCTGAATGGTTTTCAGAAGATGGATCCTCGGAATTTTCACGCCTGGAATTACCGAAGGTTTGTTGCTGAACTGATGAAACGATCGGATGAGGATGAGTTGAAATACACAGAGGAAGTGATAGGGACTAATTTCAGTAATTACTCTGCTTGGCACAATCGTAGTGTGCTTTTGTCTAATTTGCTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAAGGGGAGTTTGAGCATGTCCACAATGCTATTTTTACCGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAAAACTGATGCTCCTCTACTTGTTTCGTCTTGGCCTTCACATGGATCTAATATAACTCTAATTGGGGACAACGACCTTCGTGGTTGTGGTTTGTCTCTGCTGAATGGTACACTATCAGACACTGAAACACTTCCAATCATTCTTTATTTCAATCAAGCTGTCGAAGGAATAAACTCATCCACAGTGGCTATTAAATCTGAACTTTTAAAGGAGGAACTTGTTTGGAAACCACTTTCAATGAAAATTTTAAATACTGCACAGGTTTGGGTTGTATATCTAAACCTTGGAAATATGGAGCTTCAACCATCAAAAACTTACTCTGTAGAGATCAATATTGGACATTCTAAGGGTGTTGTATCTTCAAATGGAAATCACTATGGTGATCCTTCCCAAATTTCCTTTGAAGTGTTTGTACAGACTGCCTCTACTGAACCTACTGAAGGACAGGGTGGGAAAAGGACTACATGGAAGGATACAAATTTCCAAAAAATTGATCATTTTCAGGAATCAGATTCCATTCTTCCTGCTGATCAAAATCCCCATATTCCGACAACTTCCAATTGGTGCACTGAGGAAATTGGTGAAGAAATAACTAAATTTCAGGACTTATTGTCCGAGTATGATTGTAAAATTGGAAAACTTACACTTGCTAGACTTTTGACTGCTCTTGACTTGTTATCATCTCAACATGATGGAAGAAAATCTAACACCGAAGAAGTTCTTCAACTTTACACGGATCTGATGAAGTTGGATCCAACACATTCTCTTTACTACAAAGACGAGCATAGTCTAATATCACTAAAGCGGATAACTTCAACTAGGGACTCTTTACTACCATACTGCCACTACTATAAAGATGCAACAGAAACAATCACTGGTTATTTTTGTCTAAAATTACAAAATCTATCATTATCACGGATGGGATCCATTGAGAATTTATTGTGGGTGCAAATGCTAGACCTTAGCCACAACGAACTTCAATCCATCGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAATTTGGTAGTTTTACTGCTTTGGGGCCTGTGAGATTGCTTAAGTCACTTAAAGTGTTGAATATTTCATACAATGAGTTAGGCTCTCACTCGATTGACACCACGAGATACTTATGCTCTTCTCCTGTATCACATACTGAAGAATTTGCCTGGGACCGTTTTGAAATCCTCACTGGCAGCATTAATGCCACAAAATTTTGGGAAGCTTTCTTGATATTTGGAAGCTTGACATTGACAGAGTTAAACATAACAGGGAATGCAGTAGCTGATGAGAACTTCAGGTCATTTCTCGTTAAAGTTTTGCCAACACTCAGGTGGCTAGATGATGAAGAATTATCTTGA
Predicted protein sequences of Glyma04g10240
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g10240.1 sequence type=predicted peptide gene model=Glyma04g10240 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHGRPRKALKQEDEAASAAKAEKLRSLQAQFLANHHNHIYSKEALDVSAKLLEVNPECYTAWNYRKLAVQHLLSNSDSDPHSIFDDELKLVEIALRKNFKSYGAWHHRKWVLSKGHSSIDNEMRLLNGFQKMDPRNFHAWNYRRFVAELMKRSDEDELKYTEEVIGTNFSNYSAWHNRSVLLSNLLKRKAEGYFPKEKVLEGEFEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSNITLIGDNDLRGCGLSLLNGTLSDTETLPIILYFNQAVEGINSSTVAIKSELLKEELVWKPLSMKILNTAQVWVVYLNLGNMELQPSKTYSVEINIGHSKGVVSSNGNHYGDPSQISFEVFVQTASTEPTEGQGGKRTTWKDTNFQKIDHFQESDSILPADQNPHIPTTSNWCTEEIGEEITKFQDLLSEYDCKIGKLTLARLLTALDLLSSQHDGRKSNTEEVLQLYTDLMKLDPTHSLYYKDEHSLISLKRITSTRDSLLPYCHYYKDATETITGYFCLKLQNLSLSRMGSIENLLWVQMLDLSHNELQSIEGLEAMQLLSCLNLSHNKFGSFTALGPVRLLKSLKVLNISYNELGSHSIDTTRYLCSSPVSHTEEFAWDRFEILTGSINATKFWEAFLIFGSLTLTELNITGNAVADENFRSFLVKVLPTLRWLDDEELS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
