Glyma04g10200 - SoyBase

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Report for Sequence Feature Glyma04g10200

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8426566
stop:	8437409
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24520	AT	Annotation by Michelle Graham. TAIR10: P450 reductase 1 \| chr4:12663065-12667066 REVERSE LENGTH=692	SoyBase	E_val: 0	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003958	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADPH-hemoprotein reductase activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0010181	GO-mf	Annotation by Michelle Graham. GO Molecular Function: FMN binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1158	KOG	NADP/FAD dependent oxidoreductase	JGI		ISS
PTHR19384	Panther	NADPH FLAVIN OXIDOREDUCTASE	JGI		ISS
PTHR19384:SF17	Panther	NADPH-CYTOCHROME P450 REDUCTASE	JGI		ISS
PF00175	PFAM	Oxidoreductase NAD-binding domain	JGI		ISS
PF00258	PFAM	Flavodoxin	JGI		ISS
PF00667	PFAM	FAD binding domain	JGI		ISS
UniRef100_I1K9R6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADPH--cytochrome P450 reductase n=1 Tax=Glycine max RepID=I1K9R6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0001D1DA08	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001D1DA08 related cluster n=1 Tax=unknown RepID=UPI0001D1DA08	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10200

Paralog	Evidence	Comments
Glyma06g10180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g095500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10200

Limit To All Plant Sequences

>Glyma04g10200.1   sequence type=CDS   gene model=Glyma04g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCAATTCCGATTTGGTCCGCGCCGTTGAGTCGCTCCTCGGCGTCTCGCTCGCCGATTCCGTCTCCGATTCTTTGCTCCTCATTGCGACCACCTCCGCCGCCGTCATAATCGGCCTTCTCGTGTTTCTCTGGAAGAAATCTTCGGATCGGAGCAAGGAGGTGAAGCCGGTGATCGTGCCGAAGGGCTTGCCGAAGGATGAGGACGACGAGATCGATGTTGCCGACGGGAAGACTAAGGTCACGATTTTCTTCGGTACTCAAACCGGCACTGCTGAAGGCTTTGCTAAGGCATTGGCAGAGGAGATCAAGGCAAGATATGATAAAGCAGCTGTCAAAGTTGTTGACCTGGATGACTATGCAGCGGATGATGATCAATATGAGGAGAAGCTGAAGAAAGAGACTGTTGCATTTTTCATGCTGGCAACTTATGGAGATGGAGAGCCAACTGATAATGCTGCAAGATTCTACAAATGGTTTACTGAGGGGAAAGATGAGAGGGGAACCTCGCTTCAACAGCTCACATATGGAGTTTTTGGCCTGGGTAACAGACAATACGAACACTTTAATAAGATAGGTAAAGTTGTTGATGAAGAACTTAGTGAACAAGGAGCAAAGCGTCTTGTTACACTTGGATTAGGTGATGATGATCAATCCATTGAAGATGATTTTTCTGCCTGGAAAGAAACTTTGTGGCCTGAGTTGGATAAGTTGCTCCGAAATGAGGATGATGCAAATACTGTCTCTACCCCCTATACAGCTGCTATTCTTGAATATCGAGTAGTGATTCATGACCCAACTGTCACATCATCCTATGATAATCACATAAACGTGGCAAATGGGAATGCTGTGTTTGATATTCATCATCCTTGCAGGGCGAATGTTGCTATACAGAGGGAGCTTCACAAACCTGAGTCTGACCGTTCTTGCATACATTTGGAATTTGATATATCAGGGACTGGCATAACATACGAAACTGGAGACCATGTCGGTGTCTATGCTGATAACTGCAACGAAACTGTTGAAGAAGCTGGGAAGTTGTTGGGTCAGAATTTAGATCTATTGTTTTCTCTTCACACTGATAAGGAGGATGGCACTTCCCTAGGCGGTTCTCTCCTGCCTCCTTTCCCTGGCCCTTGCACTCTGCGTACTGCATTAGCACGCTATGCTGATCTCTTGAACCCCCCACGAAAGGCTGCTTTAGTTGCTTTAGCTGCTCATGCTTCTGAACTTAGTGAAGCAGAAAGATTAAAGTTCCTTTCATCTCCTCAGGGAAAGGATGAGTACTCCAAATGGGTGGTTGGAAGCCAGAGAAGTCTCCTTGAGGTGATGGCTGAGTTCCCATCAGCCAAACCTCCCCTTGGTGTTTTTTTTGCTGCAGTAGCCCCTCGTTTACAGCCTCGTTATTATTCTATTTCATCCTCTCCTAGGTTTGCTCCGCAAAGGGTACATGTTACTTGTGCCTTGGTGTATGGTCCAACTCCCACTGGTAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGAATGCTATTCCCTTAGAAAAAAGTCCCGACTGTTGCTGGGCTCCTATTTTTATTAGGCCATCGAATTTCAAGCTACCAGTTGATCATTCAATTCCTATTATTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGGAAAGATTTGCGCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGAATGGATTTTATTTATGAGGATGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTTTCAGAATTGATAGTTGCATTCTCTAGAGAGGGGGCTGAAAAGGAATATGTTCAACACAAGATGATGGATCAAGCTGCACATCTGTGGAGTTTGATTTCTCAAGGAGGTTATCTTTACGTCTGTGGTGATGCCAAGGGTATGGCCAGAGATGTTCATCGAATTCTTCATACCATTGTCCAGCAGCAGGAAAATGTGGACTCGACAAAGGCTGAGGCTATAGTGAAAAAACTTCAGATGGATGGACGTTACCTAAGGGACGTATGGTGA

Predicted protein sequences of Glyma04g10200

Limit To All Plant Sequences

>Glyma04g10200.1   sequence type=predicted peptide   gene model=Glyma04g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASNSDLVRAVESLLGVSLADSVSDSLLLIATTSAAVIIGLLVFLWKKSSDRSKEVKPVIVPKGLPKDEDDEIDVADGKTKVTIFFGTQTGTAEGFAKALAEEIKARYDKAAVKVVDLDDYAADDDQYEEKLKKETVAFFMLATYGDGEPTDNAARFYKWFTEGKDERGTSLQQLTYGVFGLGNRQYEHFNKIGKVVDEELSEQGAKRLVTLGLGDDDQSIEDDFSAWKETLWPELDKLLRNEDDANTVSTPYTAAILEYRVVIHDPTVTSSYDNHINVANGNAVFDIHHPCRANVAIQRELHKPESDRSCIHLEFDISGTGITYETGDHVGVYADNCNETVEEAGKLLGQNLDLLFSLHTDKEDGTSLGGSLLPPFPGPCTLRTALARYADLLNPPRKAALVALAAHASELSEAERLKFLSSPQGKDEYSKWVVGSQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSSPRFAPQRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEKSPDCCWAPIFIRPSNFKLPVDHSIPIIMVGPGTGLAPFRGFLQERFALKEDGVQLGPAILFFGCRNRRMDFIYEDELKNFVEQGSLSELIVAFSREGAEKEYVQHKMMDQAAHLWSLISQGGYLYVCGDAKGMARDVHRILHTIVQQQENVDSTKAEAIVKKLQMDGRYLRDVW*

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