Glyma04g10160 - SoyBase

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Report for Sequence Feature Glyma04g10160

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8401310
stop:	8405821
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09720	AT	Annotation by Michelle Graham. TAIR10: Kinase interacting (KIP1-like) family protein \| chr1:3144438-3147303 REVERSE LENGTH=928	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
PF07765	PFAM	KIP1-like protein	JGI		ISS
UniRef100_B9RJX8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Restin, putative n=1 Tax=Ricinus communis RepID=B9RJX8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A0A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A0A5 related cluster n=1 Tax=unknown RepID=UPI000233A0A5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10160

Paralog	Evidence	Comments
Glyma06g10151	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g095100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10160

Limit To All Plant Sequences

>Glyma04g10160.2   sequence type=CDS   gene model=Glyma04g10160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTTTGATTGTTACACACAAAATGTTGGGAAGGGCAGCAACCAATGCATATTCATGGTGGTGGGCAAGCCACATCAGGACAAAGCAATCCAAATGGCTAGAACAAAGTCTCCGAGATATGGAAGATGTGATGGCTGAAACCCTCAACATCATTCATAATGAAGGAGAGTCATTTTCCCAAAGGGCAGAAATGTACTACAGGAAGAGGCCACAGCTGGTAGGTTATGTGGAAGAAGTCTTTCGCTCATATAGAGCATTAGCAGAGAGATATGATCTTCTATCAAAGGAGCTCCAAAGCGCCAACCACACTATTGCCATTGTTTTCCCAGAACAAGTCCATTATAGAATTGATGAGGATGATGCTGAAGAAAGTTTCCCTGGAACAAATTCATCATCTCAAGATCCCAACAATCAAACACCAAAACCAGGCATTCCTAAAGCTCCAAATTTCCCAAATAAGGACTTTAGAAGTCCATCAATGTTGCTTTCTAGGAAGGGTCCACTTAGGAGGGTTTCTAGCCCTGCAAAATCCCCTCCCACAAGTCCTAGTTCAGGTCTGAGTAAGGCTGAAGCACTAGCAGAAGTTGACAAGCTTCAGAAAGAAATTTTGGCACTACAGACTGAGAAAGAGTTTGTAAGGAGCTTGTATGAAAATTCCTATGAAAAGCACTGGGAAATTGAAGACCAGATTACACAAATGCAGAAAAGGGTTTGCAGCTTGCAAGATGAGTTTGGAATTAATACATTCATAGAAGATAACGATGCACGAGCTCTGATGGCTGCAACAGCTCTGAAGTCATGCAAAGAGACCCTGGCTAAGTTGCAAGAGGCACAGGCACAATCATCTGAAGAGGCTAAAGAATCATACCAAATGGTTAAGGAAGCTCACAGCAAGTTTGAAACCCTTAGAGACCTATTCATTTCTAAACATAAGAGTCAACAAGACCAAGTAACAGAACCAAAAAGCATTGAGGAAGAAGACATGTCTAGCTTGGAAGAAGAAATCTATGAACATGATGTGGGGCGGTTGCAAGACACAATTAAGGAAAAGCTTGAGGGAGATTCAGTTAGCTCCCTCACTATGACAGAAATGGCAGAGAAGATTGATGAGCTTGTAAATAAGGTCGTTACCCTTGAAACCACAGTCTCTTCTCAGACTGGCTTGGTAAAGAGACTGAGATCAGAAGCAGATGAACTTCAAAAAAAATTATTGAGCTTGGAAGAGGACAAAGAAGTGTTGATAGAAGATTCAGAAGGAACCAAAAAGAAGCTGGAAGAAGTGGAGGAGGAGTTGAAGAGAGTTAAAACTCTCAATCAAAGTGTCAAAAGGCAAGACAACAGCCTCCAGACACAGTTTACTGAAGCTAGTTGTGATCTTAAACATCTTTCAGGAAAATTGAATGATGTGAAGCTAGATGAGGAGGGGGAGAACTTGCAACTTCACAAAAACAAAAGTGCACATGATGGAGAACTGAAAGAGGAGTCTGAAAAACCAGGTGACAACACAGAAACCATGAAGGATATTGAGACAACAAAGGAAGAAAAGGAAGATTGTAGTGTAAATCTTAGTGATGTTGAAAATGAAGATAACAAGTCCAATTCGAAAGAAAATGTTGATTTTAGGACTGAAGAGATTCCAGAGCAAATGCTGCAGAATAAGGATGATTTGTCTGAGGCAAGGAGTAATCTTGACACTGAATCACTTGATCAGGAGACTGGTGAGGAAGAAAATCAATCCAACAGGAGTCAGATGATTGCAAGTGGATTTGATGACAGAGAAAAGATTCTGAAGGAATTCACATCAGTTTTAAAGAACTACGAGGATGTAAAGGACGAGCTCAATGATGTGGTGAAGAAAAACCAGGACAGCATTTTTCAATTGGCACTTCAGGTGAGGGAATTGAAGGATACTGTTGAAACTAAAGATCAAGAGATAAACATTTTACAACAGAAGCTGACCTGTTCGGAAACAAATCCAGATGAAAGTCCTTGCACCCCTGTTACAGATTATAAATACACACCACAAGAAGCACTTCTTGGAACTGCAGCTCAAGGAACCGACCCTCAGGACCCTGAAAATCCATCTTCAAATACAGATGCAATTGCAGTTAGTACTTCTTATGCAGGGAAACACCAACAATATGTTGAAAACAAAGGAAGGATTGGCATATTAGTGAAGGTGAGACCAAACCAGCTTGATAAGAGCCACTCACTTTCAACCTTGGAAAAGAAATTTCGTTCCAACATTGATGATTTGCTTGAGGAGAACTTGGAGTTCTGGTTGAGGTTTAGCACCTCAGTGCACCAGGTTCAAAAGTTTCAAAGTTCTATAGAGGACTTAAAATTTGAGCTTAAAAGAATAAGGGATAACATGTTTCAAGAGAACTCAAGTTCTATACAATCTGAGATAAAACCAATATTTAGACACCTAAGGGAGATAAGAACTGATTTATCACTATGGCTGGAACACAGTGAAGTGTTGCATGAAGAGTTGCAAGGTAGGCATCCATCATTGTGCACCTTACAAGATGAAATAGCAAGAACAGCCAATCCAAACCCTGCATCAAATAACATGGCAAAACTAAGTGGGTATCAGGCTGCAAAGTTTCAAGGTGAGGTTCTCAACATGAAACAGGAGAGCAACAAGGTTTCTAGTGAACTGCAAGGATGTGTCAGTTTTGTGAAGGAACTGAAGGGCCAAGTTGAGAAGATGCTAGAAGAACTGAGTCAAGAAATTGGAGTTAACAATCATGACCATATGAAACACTCCACAAGTAGTTCTAGAATACCCTTGAAGTCTTTTCTGTTTGGAATCAAGTTAAAGAAGCAAAAGCAATCGTTCCTCTCATGTGTAACTCCAACAAAGAGACAACACAGGAATCTAGCAGCGGCTGAAGATGCCCCTATATAG

Predicted protein sequences of Glyma04g10160

Limit To All Plant Sequences

>Glyma04g10160.2   sequence type=predicted peptide   gene model=Glyma04g10160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCLIVTHKMLGRAATNAYSWWWASHIRTKQSKWLEQSLRDMEDVMAETLNIIHNEGESFSQRAEMYYRKRPQLVGYVEEVFRSYRALAERYDLLSKELQSANHTIAIVFPEQVHYRIDEDDAEESFPGTNSSSQDPNNQTPKPGIPKAPNFPNKDFRSPSMLLSRKGPLRRVSSPAKSPPTSPSSGLSKAEALAEVDKLQKEILALQTEKEFVRSLYENSYEKHWEIEDQITQMQKRVCSLQDEFGINTFIEDNDARALMAATALKSCKETLAKLQEAQAQSSEEAKESYQMVKEAHSKFETLRDLFISKHKSQQDQVTEPKSIEEEDMSSLEEEIYEHDVGRLQDTIKEKLEGDSVSSLTMTEMAEKIDELVNKVVTLETTVSSQTGLVKRLRSEADELQKKLLSLEEDKEVLIEDSEGTKKKLEEVEEELKRVKTLNQSVKRQDNSLQTQFTEASCDLKHLSGKLNDVKLDEEGENLQLHKNKSAHDGELKEESEKPGDNTETMKDIETTKEEKEDCSVNLSDVENEDNKSNSKENVDFRTEEIPEQMLQNKDDLSEARSNLDTESLDQETGEEENQSNRSQMIASGFDDREKILKEFTSVLKNYEDVKDELNDVVKKNQDSIFQLALQVRELKDTVETKDQEINILQQKLTCSETNPDESPCTPVTDYKYTPQEALLGTAAQGTDPQDPENPSSNTDAIAVSTSYAGKHQQYVENKGRIGILVKVRPNQLDKSHSLSTLEKKFRSNIDDLLEENLEFWLRFSTSVHQVQKFQSSIEDLKFELKRIRDNMFQENSSSIQSEIKPIFRHLREIRTDLSLWLEHSEVLHEELQGRHPSLCTLQDEIARTANPNPASNNMAKLSGYQAAKFQGEVLNMKQESNKVSSELQGCVSFVKELKGQVEKMLEELSQEIGVNNHDHMKHSTSSSRIPLKSFLFGIKLKKQKQSFLSCVTPTKRQHRNLAAAEDAPI*

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