SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G61700 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerases N / 8 kDa subunit | chr1:22787105-22788112 FORWARD LENGTH=71 | SoyBase | E_val: 9.00E-46 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG3497 | KOG | DNA-directed RNA polymerase, subunit RPB10 | JGI | ISS | |
| PTHR23413 | Panther | 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N | JGI | ISS | |
| PF01194 | PFAM | RNA polymerases N / 8 kDa subunit | JGI | ISS | |
| UniRef100_I1JV73 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV73_SOYBN | SoyBase | E_val: 1.00E-44 | ISS |
| UniRef100_Q9SYA6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=2 Tax=Arabidopsis RepID=RPAB5_ARATH | SoyBase | E_val: 4.00E-43 | ISS |
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Glyma04g10140 not represented in the dataset |
Glyma04g10140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g094900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g10140.5 sequence type=transcript gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTTTTATGAATCAACTTGATCGGTAAAGGGAAAAAGAAGATAAGAGAAATTTTACCATTTTTAAAGAATGCTAGATGCACCAGCAATAATGCTGGATGTACCTAGCATCTTAGTAAGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGGTTCGTTTCTTCCTCTTTCGATTTCATCATCTTCTCATTCTCTGTTAATTCGTTTCTTACATCTTAAAAAACAATATAAAGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTTGGAAATGTCAGGAACACATGCTTTTTTTATATATTTTTATTGGGTGAAATTTATTCACTTTCATTATATGTGGG >Glyma04g10140.6 sequence type=transcript gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAGAAGATAAGAGAAATTTTACCATTTTTAAAGAATGCTAGATGCACCAGCAATAATGCTGGATGTACCTAGCATCTTAGTAAGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTTGGAAATGTCAGGAACACATGCTTTTTTTATATATTTTTATTGGGTGAAATTTATTCACTTTC
>Glyma04g10140.4 sequence type=CDS gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA >Glyma04g10140.5 sequence type=CDS gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA >Glyma04g10140.6 sequence type=CDS gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA
>Glyma04g10140.4 sequence type=predicted peptide gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN* >Glyma04g10140.5 sequence type=predicted peptide gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN* >Glyma04g10140.6 sequence type=predicted peptide gene model=Glyma04g10140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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