Glyma04g10140 - SoyBase

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Report for Sequence Feature Glyma04g10140

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8391828
stop:	8393206
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G61700	AT	Annotation by Michelle Graham. TAIR10: RNA polymerases N / 8 kDa subunit \| chr1:22787105-22788112 FORWARD LENGTH=71	SoyBase	E_val: 9.00E-46	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3497	KOG	DNA-directed RNA polymerase, subunit RPB10	JGI		ISS
PTHR23413	Panther	60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N	JGI		ISS
PF01194	PFAM	RNA polymerases N / 8 kDa subunit	JGI		ISS
UniRef100_I1JV73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV73_SOYBN	SoyBase	E_val: 1.00E-44	ISS
UniRef100_Q9SYA6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerases I, II, and III subunit RPABC5 n=2 Tax=Arabidopsis RepID=RPAB5_ARATH	SoyBase	E_val: 4.00E-43	ISS

Expression Patterns of Glyma04g10140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g10140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g094900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g10140

Limit To All Plant Sequences

>Glyma04g10140.5   sequence type=transcript   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTATGAATCAACTTGATCGGTAAAGGGAAAAAGAAGATAAGAGAAATTTTACCATTTTTAAAGAATGCTAGATGCACCAGCAATAATGCTGGATGTACCTAGCATCTTAGTAAGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGGTTCGTTTCTTCCTCTTTCGATTTCATCATCTTCTCATTCTCTGTTAATTCGTTTCTTACATCTTAAAAAACAATATAAAGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTTGGAAATGTCAGGAACACATGCTTTTTTTATATATTTTTATTGGGTGAAATTTATTCACTTTCATTATATGTGGG

>Glyma04g10140.6   sequence type=transcript   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAAGAAGATAAGAGAAATTTTACCATTTTTAAAGAATGCTAGATGCACCAGCAATAATGCTGGATGTACCTAGCATCTTAGTAAGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTTGGAAATGTCAGGAACACATGCTTTTTTTATATATTTTTATTGGGTGAAATTTATTCACTTTC

Coding sequences of Glyma04g10140

Limit To All Plant Sequences

>Glyma04g10140.4   sequence type=CDS   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma04g10140.5   sequence type=CDS   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma04g10140.6   sequence type=CDS   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

Predicted protein sequences of Glyma04g10140

Limit To All Plant Sequences

>Glyma04g10140.4   sequence type=predicted peptide   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma04g10140.5   sequence type=predicted peptide   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma04g10140.6   sequence type=predicted peptide   gene model=Glyma04g10140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

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