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Report for Sequence Feature Glyma04g10125

Feature Type:gene_model
Chromosome:Gm04
Start:8388400
stop:8390803
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10125
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23420AT Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein | chr1:8317423-8319104 FORWARD LENGTH=231 SoyBaseE_val: 1.00E-62ISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF04690PFAM YABBY protein JGI ISS
UniRef100_G7K086UniRef Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY n=1 Tax=Medicago truncatula RepID=G7K086_MEDTR SoyBaseE_val: 1.00E-108ISS
UniRef100_I1JV72UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV72_SOYBN SoyBaseE_val: 7.00E-137ISS

Expression Patterns of Glyma04g10125
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g10125 not represented in the dataset
Glyma04g10125 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g10125 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g094800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10125
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma04g10125
>Glyma04g10125.2   sequence type=transcript   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAATTAAACTCTCCCCATCCTTAACGTCAATGTTGGAGTGCTATCCGGCAATGAAAACCACCTTAAGCACCCCGTTCCACAAATCATTAAAGTAAGATGATGATTGATTATGAGTCTCCATCTTCAACTATAAATGCCTCCTAGTGTCAAAAGAGCTACACCTTCATCTCCCTATCTCTTCTTTCTCTTACACTATAACACACACTCTCACAAATTCAGACAGATAGACACCAATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGAACTCACAAGTGGACCCTCCTGATGCTGAGGTTAAAGCATAATTATTTGAAGAACTCAGCAATTTCTTCATTTAAGACAGAAGGTCAATGAAGAAGGTCAAGGATTCCGTGGAAGAAAGGTCCCAAGAAATTCCATCTTGGAAAGGACACAGTTTGAATGAAGAAAGCTCAGCTTATGTGACATAACAAGCTTATTTTCTGTCTTTATGGTTGCCTCTAAATAGTTTTCCTAATTAAGAAAAGATGCTCTCGGTAATGAAAACGAATTAAGAAGGGTTGAGACTTGAGAGCTGACAATTTGAGACTTTAGGAAGTGCTTTACATTGATACTTTTATCTGACACCTTTATTTTACAGCATACCAGTTCCATTAACTAGTCTTCAGGACCACAAATGTTTTTTTTCTATTGTTTTTATGTTGTTGGTTCTAATAAATGTTCATTTGTTAAGTGTTCCT

>Glyma04g10125.3   sequence type=transcript   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTTACACTATAACACACACTCTCACAAATTCAGACAGATAGACACCAATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATGTAAGTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGAACTCACAAGTGGACCCTCCTGATGCTGAGGTTAAAGCATAATTATTTGAAGAACTCAGCAATTTCTTCATTTAAGACAGAAGGTCAATGAAGAAGGTCAAGGATTCCGTGGAAGAAAGGTCCCAAGAAATTCCATCTTGGAAAGGACACAGTTTGAATGAAGAAAGCTC
Coding sequences of Glyma04g10125
>Glyma04g10125.1   sequence type=CDS   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGAACTCACAAGTGGACCCTCCTGATGCTGAGGTTAAAGCATAA

>Glyma04g10125.2   sequence type=CDS   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGAACTCACAAGTGGACCCTCCTGATGCTGAGGTTAAAGCATAA

>Glyma04g10125.3   sequence type=CDS   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACATACAATGTGGATTCTGTAGCACTATTTTAATGCAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGGCACTGCACAAGCCTCTTTTCTGTTAATATGTCGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGCCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAGTCATCATGTTGTGAATAAACCGCCAGAGAAGAGACAACGAACACCATCTGCTTATAACTGCTTCATCAAGAAGGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATGTAAGTGGGCCAATTTTCCCCAAACTCAGTGGTGCAGAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGA
Predicted protein sequences of Glyma04g10125
>Glyma04g10125.1   sequence type=predicted peptide   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLNHLFDLPEQICYIQCGFCSTILMQVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMSHHVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQTQWCRGDEESCSQTDQLVNSQVDPPDAEVKA*

>Glyma04g10125.2   sequence type=predicted peptide   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLNHLFDLPEQICYIQCGFCSTILMVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMSHHVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNWANFPQTQWCRGDEESCSQTDQLVNSQVDPPDAEVKA*

>Glyma04g10125.3   sequence type=predicted peptide   gene model=Glyma04g10125   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLNHLFDLPEQICYIQCGFCSTILMQVSVPCSSLSMVVTVRCGHCTSLFSVNMSKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMSHHVVNKPPEKRQRTPSAYNCFIKKEIKRLKAENPDMAHKEAFSTAAKNVSGPIFPKLSGAEEMKRAVARQINL*






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