Glyma04g10090 - SoyBase

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Report for Sequence Feature Glyma04g10090

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8347627
stop:	8358991
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60490	AT	Annotation by Michelle Graham. TAIR10: vacuolar protein sorting 34 \| chr1:22285792-22290190 REVERSE LENGTH=814	SoyBase	E_val: 0	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006897	GO-bp	Annotation by Michelle Graham. GO Biological Process: endocytosis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0032957	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol trisphosphate metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0046855	GO-bp	Annotation by Michelle Graham. GO Biological Process: inositol phosphate dephosphorylation	SoyBase	N/A	ISS
GO:0048015	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol-mediated signaling	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0055046	GO-bp	Annotation by Michelle Graham. GO Biological Process: microgametogenesis	SoyBase	N/A	ISS
GO:0072593	GO-bp	Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005942	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phosphatidylinositol 3-kinase complex	SoyBase	N/A	ISS
GO:0016303	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol-3-kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
GO:0035004	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol 3-kinase activity	SoyBase	N/A	ISS
KOG0906	KOG	Phosphatidylinositol 3-kinase VPS34, involved in signal transduction	JGI		ISS
PTHR10048	Panther	PHOSPHATIDYLINOSITOL KINASE	JGI		ISS
PTHR10048:SF7	Panther	PHOSPHATIDYLINOSITOL 4-KINASE	JGI		ISS
PF00454	PFAM	Phosphatidylinositol 3- and 4-kinase	JGI		ISS
PF00613	PFAM	Phosphoinositide 3-kinase family, accessory domain (PIK domain)	JGI		ISS
PF00792	PFAM	Phosphoinositide 3-kinase C2	JGI		ISS
UniRef100_I1JV67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV67_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P42347	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol 3-kinase, root isoform n=1 Tax=Glycine max RepID=PI3K1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g10090

Paralog	Evidence	Comments
Glyma06g10090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g10090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g094500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10090

Limit To All Plant Sequences

>Glyma04g10090.1   sequence type=CDS   gene model=Glyma04g10090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCGGTAACGAGTTTCGCTTCTTCTTGTCCTGCGATATCAGTGTTCCTGTCACCTTCCGCGTCGAGCGCCTTGAAGGCAATTTGCCCCTTCCGAATCCCAAATCACCCGATTTAGAAACTAATGCCCCCACAGAGAATAGAACAAAAGAGTTGTTTGTGGAGTGTGCTTTGTACATTGATGGTGCACCGTTTGGCCTTCCAATGAGAACAAGGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGACAACTAAATATCGAGACTTAACTGCCCAGTCACAACTCACGTTCACTGTTTGGGATCTTTCGCATGGTGAAGGATTAATTGGAGGAGCCACAATTCTTCTCTTCAACAACAAAAAGCAGCTCAAAACTGGGAAGCAAAAGCTTAGGCTTTGGGCAGGAAAAGAGGCAGATGGAACATTCCCTACTAGTACACCTGGAAAGGTCCCTAGGCATGAACGTGGGGAATTGGAGCGATTAGAAAAGCTTGTGAATAAGTATGAACGAGGTCAAATTCAACGGGTGGACTGGCTGGATCGCCTGACATTTAAAACTATGGAGAGAATCAAGGAACGCGAAAGCTTGAAAAATGGAAGTTCTCATTTGTACCTGGTTGTGGACTTCTGTAGTTTTGAGCATCGAGTTGTTTTTCAGGAATCAGGTGCAAATTTCTTGTTTCCATCACCTATAGCCTCCACCAATGATATTGTTGTTGTCTGGGATCCAGAAGTGGGAAAGATAAATCCCTCTGAGCACAAACAGTTAAAGCTGGCCAGGAGTTTGACCCGTGGTGTCATAGACAGAGATCTGAAGCCAAGCTCAAATGAGAGAAAGTCCATTCAGCGAATACTAAAATATCCACCGACAAGGACTTTGAGTGGAGATGAGAGGCAGCTCTTGTGGAAATTTCGATTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTCCAGGAAGCAAAACAAGCATTAGAGTTGATGGGCAAGTGGGAAATGATTGATGTTTGTGATGCACTGGAACTTTTGTCGCCTGTTTTTGAAAGTGAAGAGGTCCGTGCTTATGCAGTTAGTGTTCTTGAAAGAGCTGATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTGACAAATCTCGCCTTTCTCATTTCCTTGTCCAGCGTGCATTACGCAATATTGAATTGGCAAGCTTTCTTCGCTGGTATGTGGCTGTTGAACTTTATGATCCTGCATATGCCAAACGATTTTACTGCACTTATGAGATTCTGGAGGAGAATATGATGAAGATAGCAGCTGGTGTTAATGGAGAGGAAGATGGGTTTAAACAGTGGCAGAGTTTGGTACGCCAGACAGAATTGACTGCTCAGTTGTGTTCAATCACTAGAGAAGTAAGGAATGTTCGTGGTAATACACAGAAGAAGATTGAAAAGCTGAGACAACTACTTTCTGGTCTTCTTAGTGAACTTACCTATTTTGATGAGCCAATACGATCACCTTTGGCACCAGGTGTCCTCATTGCTGGAATTGTACCTTCAGAGTCATCAATATTTAAAAGTGCATTGCATCCTTTGCGCCTTTCTTTTAGAACAGCAAATGGTGGAACATGCAAAATCATATTTAAAAAGGGTGACGATCTTCGGCAGGACCAGTTGGTTGTTCAAATGGTATCACTAATGGATCGATTGCTTAAGTTGGAAAATCTTGATCTGCACCTAACACCATACAAGGTGCTAGCAACTGGACAAGATGAAGGCATGTTGGAATTTATTCCATCTCGCTCATTGGCACAGATTTTGTCAGAGAATCGTAGCATCATAAGCTATTTGCAAAAGTTTCATCCTGATGACCATGGGCCTTTTGGAATTACAGCCACCTGCCTTGAAACATTTATAAAAAGCTGTGCTGGATACTCTGTTATAACATATATACTTGGTATCGGAGACAGGCATTTAGACAATCTCCTCCTTAGAAATGATGGAGGTCTTTTCCATGTTGATTTTGGTTTTATTCTTGGCCGAGATCCTAAGCCATTTCCACCACCAATGAAGCTTTGCAAGGAAATGGTTGAGGCTATGGGTGGAGCTGAAAGCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTGAATCTATTTTACCTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGCTTCAGGAAAAGTTTCGGTTGGACTTGGATGATGAAGCCAGTATACATTTCTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTATTCCCTCAGATGGTTGAGACTATCCATCGTTGGGCTCAATATTGGCGGTAA

Predicted protein sequences of Glyma04g10090

Limit To All Plant Sequences

>Glyma04g10090.1   sequence type=predicted peptide   gene model=Glyma04g10090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTGNEFRFFLSCDISVPVTFRVERLEGNLPLPNPKSPDLETNAPTENRTKELFVECALYIDGAPFGLPMRTRLESSGPSYCWNELITLTTKYRDLTAQSQLTFTVWDLSHGEGLIGGATILLFNNKKQLKTGKQKLRLWAGKEADGTFPTSTPGKVPRHERGELERLEKLVNKYERGQIQRVDWLDRLTFKTMERIKERESLKNGSSHLYLVVDFCSFEHRVVFQESGANFLFPSPIASTNDIVVVWDPEVGKINPSEHKQLKLARSLTRGVIDRDLKPSSNERKSIQRILKYPPTRTLSGDERQLLWKFRFSLMSEKRALTKFLRCVEWSDVQEAKQALELMGKWEMIDVCDALELLSPVFESEEVRAYAVSVLERADDEELQCYLLQLVQALRFERSDKSRLSHFLVQRALRNIELASFLRWYVAVELYDPAYAKRFYCTYEILEENMMKIAAGVNGEEDGFKQWQSLVRQTELTAQLCSITREVRNVRGNTQKKIEKLRQLLSGLLSELTYFDEPIRSPLAPGVLIAGIVPSESSIFKSALHPLRLSFRTANGGTCKIIFKKGDDLRQDQLVVQMVSLMDRLLKLENLDLHLTPYKVLATGQDEGMLEFIPSRSLAQILSENRSIISYLQKFHPDDHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRNDGGLFHVDFGFILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFYLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEASIHFFQDLINESVSALFPQMVETIHRWAQYWR*

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