SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G58200 | AT | Annotation by Michelle Graham. TAIR10: MSCS-like 3 | chr1:21548370-21552488 REVERSE LENGTH=678 | SoyBase | E_val: 3.00E-124 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0009694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009526 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005216 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ion channel activity | SoyBase | N/A | ISS |
| PF00924 | PFAM | Mechanosensitive ion channel | JGI | ISS | |
| UniRef100_G7J539 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MscS-Like mechanosensitive ion channel MSCL8 n=1 Tax=Medicago truncatula RepID=G7J539_MEDTR | SoyBase | E_val: 2.00E-155 | ISS |
| UniRef100_UPI000233A619 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A619 related cluster n=1 Tax=unknown RepID=UPI000233A619 | SoyBase | E_val: 0 | ISS |
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Glyma04g10050 not represented in the dataset |
Glyma04g10050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g094200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g10050.2 sequence type=CDS gene model=Glyma04g10050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTGAAAGCTCATAAACCTCTGTGTGGTGATCGATTATGTTTTGTTGCCATCAGTCTTTTGCCACATGGTTTAAGGCAGGATTCTTTAGCACTGCTTTCCAGATTATGGACCCCACTTAGGCCGGTACCTTTGAGATGTAATGCTTTGCCGTGGCAATGTTCCCTAATACCAGCTGGAGGGTCATATAATGCTATAGCAGGAAAACCAAGTGTGATTCAATTTATCCCTGCCCTTGGTATCATTGGCTTTGCTGTTTTTGGCCTTGAGCCGCTCCTACGCCTGAGCAGGAATCTTTTTCTCCAAGAAAGGACAGATTGGAAGAAAAGTAGTTCACGTTATATTTTGACATCTTATTTTCAACCTTTGCTGTTGTGGCCTGGGGTAATGCTCATCTGCAGGTATCTTTCTGGATCAACAAGTCTTTTCCACTGGAAGTTTGTCATGTCCATTGGTGAACACCTTAGCATAAACTGTTTCAGGGATTTGGATCCACTAGTCCTACCATCAGAAACCAGTCAAGCTATTAAGCAACGGCGGCTGAGTTTTGTACGATCGTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCACAAAATATTTGTATGGGGACAAATGACTCCAGTGATGAAAGAAATTTGACTGCTGGTGGTTTGGGCACAGTATCGATTTCCCTTGCAGGTCGCGAGATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTAAGCTGGTGGTCACCAACAATAGTGAGAGTTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGGGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATTATAGCTTATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACATAAGGGTTTTTCTAGAGAATATTGATCCAGAAAATCAGGCTCTTATGGTTGATGATATATCTTTTCTGTTCATCGGTTTATATAATATTTACAAGTTTATAAATTCCAATATCTTGTTATCTTTCCCTTTTCTTCAATTTTTGTTTTAA
>Glyma04g10050.2 sequence type=predicted peptide gene model=Glyma04g10050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLKAHKPLCGDRLCFVAISLLPHGLRQDSLALLSRLWTPLRPVPLRCNALPWQCSLIPAGGSYNAIAGKPSVIQFIPALGIIGFAVFGLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRYLSGSTSLFHWKFVMSIGEHLSINCFRDLDPLVLPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNLTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINSIIAYMRKVLAKNPQVEQKKLHIRVFLENIDPENQALMVDDISFLFIGLYNIYKFINSNILLSFPFLQFLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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