Glyma04g10050 - SoyBase

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Report for Sequence Feature Glyma04g10050

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8302112
stop:	8307589
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g10050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58200	AT	Annotation by Michelle Graham. TAIR10: MSCS-like 3 \| chr1:21548370-21552488 REVERSE LENGTH=678	SoyBase	E_val: 3.00E-124	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009694	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009526	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
PF00924	PFAM	Mechanosensitive ion channel	JGI		ISS
UniRef100_G7J539	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MscS-Like mechanosensitive ion channel MSCL8 n=1 Tax=Medicago truncatula RepID=G7J539_MEDTR	SoyBase	E_val: 2.00E-155	ISS
UniRef100_UPI000233A619	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A619 related cluster n=1 Tax=unknown RepID=UPI000233A619	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g10050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g10050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g094200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g10050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g10050

Limit To All Plant Sequences

>Glyma04g10050.2   sequence type=CDS   gene model=Glyma04g10050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGCTGAAAGCTCATAAACCTCTGTGTGGTGATCGATTATGTTTTGTTGCCATCAGTCTTTTGCCACATGGTTTAAGGCAGGATTCTTTAGCACTGCTTTCCAGATTATGGACCCCACTTAGGCCGGTACCTTTGAGATGTAATGCTTTGCCGTGGCAATGTTCCCTAATACCAGCTGGAGGGTCATATAATGCTATAGCAGGAAAACCAAGTGTGATTCAATTTATCCCTGCCCTTGGTATCATTGGCTTTGCTGTTTTTGGCCTTGAGCCGCTCCTACGCCTGAGCAGGAATCTTTTTCTCCAAGAAAGGACAGATTGGAAGAAAAGTAGTTCACGTTATATTTTGACATCTTATTTTCAACCTTTGCTGTTGTGGCCTGGGGTAATGCTCATCTGCAGGTATCTTTCTGGATCAACAAGTCTTTTCCACTGGAAGTTTGTCATGTCCATTGGTGAACACCTTAGCATAAACTGTTTCAGGGATTTGGATCCACTAGTCCTACCATCAGAAACCAGTCAAGCTATTAAGCAACGGCGGCTGAGTTTTGTACGATCGTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAATTCGACAAGCACAAAATATTTGTATGGGGACAAATGACTCCAGTGATGAAAGAAATTTGACTGCTGGTGGTTTGGGCACAGTATCGATTTCCCTTGCAGGTCGCGAGATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTAAGCTGGTGGTCACCAACAATAGTGAGAGTTTCTGATTGTGAAGCAGTTCATATTCCTAATCACAATTTGAGTGTAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGGGCATCAAGACTCACCTTGCTATCAGTCACTTGGATGTTAACAAGATTAATAGTATTATAGCTTATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACATAAGGGTTTTTCTAGAGAATATTGATCCAGAAAATCAGGCTCTTATGGTTGATGATATATCTTTTCTGTTCATCGGTTTATATAATATTTACAAGTTTATAAATTCCAATATCTTGTTATCTTTCCCTTTTCTTCAATTTTTGTTTTAA

Predicted protein sequences of Glyma04g10050

Limit To All Plant Sequences

>Glyma04g10050.2   sequence type=predicted peptide   gene model=Glyma04g10050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLKAHKPLCGDRLCFVAISLLPHGLRQDSLALLSRLWTPLRPVPLRCNALPWQCSLIPAGGSYNAIAGKPSVIQFIPALGIIGFAVFGLEPLLRLSRNLFLQERTDWKKSSSRYILTSYFQPLLLWPGVMLICRYLSGSTSLFHWKFVMSIGEHLSINCFRDLDPLVLPSETSQAIKQRRLSFVRSLSTVLTFAYCSSSLIRQAQNICMGTNDSSDERNLTAGGLGTVSISLAGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVSWWSPTIVRVSDCEAVHIPNHNLSVNVVRNLSKKSHWGIKTHLAISHLDVNKINSIIAYMRKVLAKNPQVEQKKLHIRVFLENIDPENQALMVDDISFLFIGLYNIYKFINSNILLSFPFLQFLF*

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