SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g10030

Feature Type:gene_model
Chromosome:Gm04
Start:8287126
stop:8288561
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g10030
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01710AT Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr2:315836-316771 FORWARD LENGTH=311 SoyBaseE_val: 2.00E-81ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0031072GO-mf Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF41Panther SUBFAMILY NOT NAMED JGI ISS
PF00226PFAM DnaJ domain JGI ISS
UniRef100_G7J540UniRef Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7J540_MEDTR SoyBaseE_val: 2.00E-103ISS
UniRef100_I1JV61UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV61_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g10030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g10030 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g094000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g10030
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g10030
>Glyma04g10030.1   sequence type=CDS   gene model=Glyma04g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAACAAGCAGAGCCGAAGCGGAACGCTTGCTAGCGATCGGCGAGAAGCTGCTTCAGAGCCGCGATCTGAGCAGCTCGCGCGACTTCGCCATCCTCGCCCAGGAAGCCGAGCCGCTCCTCGAAGGCTCCGACCAGATCCTGGCCATCGTCGAAGTCCTCCTCGCCGCCGAGAAGCCAATCACCAACGACCACCTCGATTGGTACGCTATTCTCCAGGTCGATCGCACGTGCCAGGACCTCGATCTCATCAAAAAACAGTACCGTAGACTCGGTCTTCTTCTTCACCCCGACAAGAACCCTTTCTCCCTCGCCGACCACGCCTTCAAGCTCGTCTCCGATGCCTGGGCCGTGCTTTCCGACCCGGTCCAGAAAGCGATTTATGACAGGGACGTGGCCGGTTCGGTCGAACCGGAGAGCTTCTGGACCGCGTGTCCGTACTGTTATTTTCTCTACGAGTACCCTGCGGTTTGCGAGGGGTGCTGCCTGAGGTGCCAGAATTGCGAGAGGTCCTTCCATGGGCTTTCGATTCCCTCGCTGCCGCCGCTCGTGCCGGGCCAGGAGGCCTATTATTGTAACTGGGGCTGCTTGCCCATGGGCTTTGTGTTTGGGAATTTGGGCTCCGATGGGCCTGGGCCTGGACCTGGGCCTATGGTCGAGAATGGACCTACTGCGGTGGCGGTTTCGAATGGGGTTAACGTTGCTTCGCGGAAGCGTGGAAGGCCGCGAAAGGGGGTTTGA
Predicted protein sequences of Glyma04g10030
>Glyma04g10030.1   sequence type=predicted peptide   gene model=Glyma04g10030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKTSRAEAERLLAIGEKLLQSRDLSSSRDFAILAQEAEPLLEGSDQILAIVEVLLAAEKPITNDHLDWYAILQVDRTCQDLDLIKKQYRRLGLLLHPDKNPFSLADHAFKLVSDAWAVLSDPVQKAIYDRDVAGSVEPESFWTACPYCYFLYEYPAVCEGCCLRCQNCERSFHGLSIPSLPPLVPGQEAYYCNWGCLPMGFVFGNLGSDGPGPGPGPMVENGPTAVAVSNGVNVASRKRGRPRKGV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo