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Report for Sequence Feature Glyma04g09990

Feature Type:gene_model
Chromosome:Gm04
Start:8262880
stop:8263555
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g09990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64030AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829 SoyBaseE_val: 9.00E-80ISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
PF03141PFAM Putative methyltransferase JGI ISS
UniRef100_G7JC39UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin-like protein n=1 Tax=Medicago truncatula RepID=G7JC39_MEDTR SoyBaseE_val: 7.00E-80ISS
UniRef100_I1KBK8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBK8_SOYBN SoyBaseE_val: 4.00E-91ISS

Expression Patterns of Glyma04g09990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g09990 not represented in the dataset
Glyma04g09990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g09990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g09990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g09990
>Glyma04g09990.1   sequence type=CDS   gene model=Glyma04g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTTGTGGCCAGCCAAACTGACCAAAGTGCCTTATTGGTTGTCGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCCCCTCAAGATTTCACTGCTGATTATGAACATTGGAAACGTGTAATGTCCAAGTCTTATCTAGACGGGATGGGAATTAAATGGTCAAATGTACGCAATGTCATTGATATGAGATCTATCTATGGAGGATTTGCTATAGCTTCGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCAGATACTCTTCCCATTATTTATGAACGAAGTCTTTTTGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATACTAGGACCTATGATCTCCTCCATGCTGATCATTTGTTTTCAAAGCTTAAGAAGAACAAACTTTTGTGCAATTTGGTTGCTATAGTGGCTAAGGGTGATCAGATTCTTAGGCCTAAAAACCAAATCACT
Predicted protein sequences of Glyma04g09990
>Glyma04g09990.1   sequence type=predicted peptide   gene model=Glyma04g09990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ELWPAKLTKVPYWLSSSQVGVYGKPAPQDFTADYEHWKRVMSKSYLDGMGIKWSNVRNVIDMRSIYGGFAIASRDLNVWVMNVVTIDSPDTLPIIYERSLFGIYHDWCESFSTYTRTYDLLHADHLFSKLKKNKLLCNLVAIVAKGDQILRPKNQIT






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