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Report for Sequence Feature Glyma04g09980

Feature Type:gene_model
Chromosome:Gm04
Start:8259244
stop:8259384
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g09980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52560AT Annotation by Michelle Graham. TAIR10: ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=164 SoyBaseE_val: 5.00E-25ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006605GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006974GO-bp Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0031372GO-cc Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
PTHR24067Panther UBIQUITIN-CONJUGATING ENZYME E2 JGI ISS
PTHR24067:SF8Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_F4J6Z1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme E2 variant 1D n=1 Tax=Arabidopsis thaliana RepID=F4J6Z1_ARATH SoyBaseE_val: 2.00E-22ISS
UniRef100_I1JQ65UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JQ65_SOYBN SoyBaseE_val: 3.00E-23ISS

Expression Patterns of Glyma04g09980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g09980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma04g09980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g09980
>Glyma04g09980.1   sequence type=CDS   gene model=Glyma04g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTCAACGTGGTGAAAAAGGAATTGGAGATGACACAGGTAGCTATGGAATGGATGATGGTGATGACATTTACATGCACTCTTGGACTGGCACCATTATTGGCCCCCATAAT
Predicted protein sequences of Glyma04g09980
>Glyma04g09980.1   sequence type=predicted peptide   gene model=Glyma04g09980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VPRNFRLLEELQRGEKGIGDDTGSYGMDDGDDIYMHSWTGTIIGPHN






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