SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G52560 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin E2 variant 1D-4 | chr3:19494678-19495954 REVERSE LENGTH=164 | SoyBase | E_val: 5.00E-25 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0006605 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006974 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0031372 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: UBC13-MMS2 complex | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24067:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_F4J6Z1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-conjugating enzyme E2 variant 1D n=1 Tax=Arabidopsis thaliana RepID=F4J6Z1_ARATH | SoyBase | E_val: 2.00E-22 | ISS |
| UniRef100_I1JQ65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JQ65_SOYBN | SoyBase | E_val: 3.00E-23 | ISS |
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Glyma04g09980 not represented in the dataset |
Glyma04g09980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g09980.1 sequence type=CDS gene model=Glyma04g09980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTCAACGTGGTGAAAAAGGAATTGGAGATGACACAGGTAGCTATGGAATGGATGATGGTGATGACATTTACATGCACTCTTGGACTGGCACCATTATTGGCCCCCATAAT
>Glyma04g09980.1 sequence type=predicted peptide gene model=Glyma04g09980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VPRNFRLLEELQRGEKGIGDDTGSYGMDDGDDIYMHSWTGTIIGPHN
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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