Glyma04g09930 - SoyBase

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Report for Sequence Feature Glyma04g09930

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8221432
stop:	8224642
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49980	AT	Annotation by Michelle Graham. TAIR10: auxin F-box protein 5 \| chr5:20334420-20336531 REVERSE LENGTH=619	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG1947	KOG	Leucine rich repeat proteins, some proteins contain F-box	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF102	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7KBF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7KBF5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JV53	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV53_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09930

Paralog	Evidence	Comments
Glyma06g09990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g093500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09930

Limit To All Plant Sequences

>Glyma04g09930.1   sequence type=CDS   gene model=Glyma04g09930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACCAAATCGACGACGGTCGAACCCTCTCCCCTCTGCCGGACCAGGTCCTGGAGAACGTCCTGGAAAGCGTGCTCCACTTCCTCACCTCCCGGCGCGACCGCAACGCCGCCTCACTGGTCTGCAAGTCCTGGTACCGCGCCGAGGCCCTCACCCGCACCGAGCTCTTCATCGGAAACTGCTACGCCGTGTCCCCCCGCCGCGCCACCGGCCGATTCCCCCGCGTCCGGTCCGTGACCATCAAGGGCAAGCCACGCTTCGCCGACTTCGACCTCATGCCCCTGAACTGGGGGGCCCACTTCACCCCCTGGGTCACCGCACTCTCCCAATCTTACCACTCCTCCCTCAACAAACTCCACCTCAAACGCATGTCCCTCACCGACCACGACCTCACCCTCCTCTCCCACTCCCTCCCCTCCTTCCAAGACCTCCTTCTCACGTGCTGCGAAGGCTTCGGCACCACCGCTCTCGCCGCCCTCGCCTCCAACTGCAGATTGCTGAGAGTGCTTGAACTAGTGGAATGCGTGGTGGAGGTTGGCGACGAGGAATTGGATTGGATATCGTGTTTTCCGGAGATTGACGCTCAGACATATTTGGAGTCTCTTGTTTTTGACTGCGTGGAGTGTCCAATTAACTTGGAGGCTTTGGAGAGGCTCGTGGCCCGGTCCCCCTCTTTGAGGAAGCTCAGGCTGAATCGTTATGTTTCCATGTCTCAGCTGCATCGCTTGATGCATCGTGCGCCGCAGTTGACGCATCTGGGAACTGGTTCGTTCAGTGCTTCGGAGCTGGATCAGGAACTGGATTTCGCGTCTGCGTTCGCGGCTTGTAAATCGTTGGTTTGTTTGTCTGGGTTCAGAGAGATTTGGCCGGATTATCTCCCTGCTATTTATCCAGCTTGTGCCAATCTCATATCCTTGAATTTCAGCTATGCTGATATCAGTGCGGATCAGCTCATATCGGTCATACGTCACTGTCATAAGCTGCAGACGTTTTGGGTCCTAGATACCATATGCGATGAAGGGCTTCAAGCAGTGGCTGAGACTTGCAAGGATTTGCGTGAGCTTCGGGTTTTCCCTGTCAATACCCGGGAGGAGATAGAAGGTCCCGTGTCTGAGGTGGGGTTTGAGGCGATTTCTCGAGGTTGTAGGAAACTGCAGTCGATTCTGTTTTTCTGCCAGAGGATGACGAATGCTGCCGTGGTAGCCATGTCGAACAACTGCCCGGATCTTGTGGTGTTTCGGTTGTGTATAATTGGGCGGTATAGGCCAGACCCAGAGACGCTAGAACCCATGGATGAGGGTTTTGGTGCCATTGTTATGAACTGCAAGAAGCTCACTCGGCTTGCTGTGTCTGGTTTGCTGACTGATCGGGCTTTTAACTACATTGGGACGTATGGGAAGTTGATTAGGACGCTGTCAGTTGCCTTTGCTGGAGACACTGATCTGGGACTCCAATATGTTCTTGAAGGATGTCCTAATCTGCAGAAGCTTGAAATCAGAGACAGTCCATTTGGGGATGGAGCTTTACGTTCTGGCTTGCATCATTTTTACAACATGAGGTTCCTCTGGATGTCCTCATGTAAGTTGACGCGCCAAGCTTGCCGGGAAGTCGCACGAATGCTGCCCCATCTGGTGTTGGAAGTCATTAATAGTGAAGAGGACAAAGCCGATGATATTGAGATTCTGTACATGTATCGGTCTCTGGACAGGCCACGGGATGATGCTCCAAAAGTTGTTACCATCCTTTGCTGA

Predicted protein sequences of Glyma04g09930

Limit To All Plant Sequences

>Glyma04g09930.1   sequence type=predicted peptide   gene model=Glyma04g09930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNQIDDGRTLSPLPDQVLENVLESVLHFLTSRRDRNAASLVCKSWYRAEALTRTELFIGNCYAVSPRRATGRFPRVRSVTIKGKPRFADFDLMPLNWGAHFTPWVTALSQSYHSSLNKLHLKRMSLTDHDLTLLSHSLPSFQDLLLTCCEGFGTTALAALASNCRLLRVLELVECVVEVGDEELDWISCFPEIDAQTYLESLVFDCVECPINLEALERLVARSPSLRKLRLNRYVSMSQLHRLMHRAPQLTHLGTGSFSASELDQELDFASAFAACKSLVCLSGFREIWPDYLPAIYPACANLISLNFSYADISADQLISVIRHCHKLQTFWVLDTICDEGLQAVAETCKDLRELRVFPVNTREEIEGPVSEVGFEAISRGCRKLQSILFFCQRMTNAAVVAMSNNCPDLVVFRLCIIGRYRPDPETLEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFNYIGTYGKLIRTLSVAFAGDTDLGLQYVLEGCPNLQKLEIRDSPFGDGALRSGLHHFYNMRFLWMSSCKLTRQACREVARMLPHLVLEVINSEEDKADDIEILYMYRSLDRPRDDAPKVVTILC*

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