Glyma04g09920 - SoyBase

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Report for Sequence Feature Glyma04g09920

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8215472
stop:	8220014
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28200	AT	Annotation by Michelle Graham. TAIR10: FH interacting protein 1 \| chr1:9850395-9852300 REVERSE LENGTH=259	SoyBase	E_val: 4.00E-118	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02893	PFAM	GRAM domain	JGI		ISS
UniRef100_G7J579	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GLABRA2 expression modulator n=1 Tax=Medicago truncatula RepID=G7J579_MEDTR	SoyBase	E_val: 2.00E-131	ISS
UniRef100_I1JV52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV52_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09920

Paralog	Evidence	Comments
Glyma06g09980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g093400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09920

Limit To All Plant Sequences

>Glyma04g09920.1   sequence type=CDS   gene model=Glyma04g09920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGCGACGCCCCAACCCAAACCCAAACCCAAGCCACCGACACCAAACCAGAAGAAACCCACACCCACACCCAAACCATCACTACCAAACCGGAAGAATCTCATTCTCAATCTCAGTCTCAGCCTCAGCCTCACACTGCCGATTATGCTCCATACCCTAAACTGGACCCCACCGATGTTGCGCCACCACTCAACACTGAATCTCGCGCTCCCATTTCCGAAGATGCTGCCACTACTATGCCCAAAGACTCCAATCCCTATGTCACTCCTGCGCCAGTTCCTGCTTCTTCTACCAAGACTACTTTAGATTCCGTGAAAGACGTTCTCGGGAAATGGGGGAAGAAAGCCGCCGAGGCCACCAAGAAGGCCGAGGATCTCGCCGGCAACATGTGGCAGCACTTGAAAACGGGACCGAGTTTTGCGGATGCTGCTGTGGGGAGGATTGCTCAGGGGACTAAAGTACTTGCAGAAGGAGGGTATGAGAAGATCTTTAGGCAAACATTTGAGACAGTTCCAGAGGAGCAGCTTCTGAAAACTTATGCATGCTACTTGTCTACCTCGGCTGGACCTGTGATGGGTGTCTTATATTTGTCAACGGCAAAGCTGGCATTTTGTAGTGATAACCCTCTTTCTTACCAAGTGGGTGGTGACCAGACTCAATGGAGCTATTATAAGGTGGTCATTCCATTGCACCAGCTGAGAGCTGTAAACGCATCAACAAGCAGAACCAACCAATCTGAAAAGTATATACAGATTATCTCTGTTGACAACCATGAATTTTGGTTTATGGGCTTTGTGCACTATGACAGCGCTGTTAAAAATATTCAAGGAGCATTGCAGCCTCATTGA

Predicted protein sequences of Glyma04g09920

Limit To All Plant Sequences

>Glyma04g09920.1   sequence type=predicted peptide   gene model=Glyma04g09920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGDAPTQTQTQATDTKPEETHTHTQTITTKPEESHSQSQSQPQPHTADYAPYPKLDPTDVAPPLNTESRAPISEDAATTMPKDSNPYVTPAPVPASSTKTTLDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKTGPSFADAAVGRIAQGTKVLAEGGYEKIFRQTFETVPEEQLLKTYACYLSTSAGPVMGVLYLSTAKLAFCSDNPLSYQVGGDQTQWSYYKVVIPLHQLRAVNASTSRTNQSEKYIQIISVDNHEFWFMGFVHYDSAVKNIQGALQPH*

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