Glyma04g09880 - SoyBase

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Report for Sequence Feature Glyma04g09880

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8148901
stop:	8152816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09460	AT	Annotation by Michelle Graham. TAIR10: sequence-specific DNA binding transcription factors;transcription regulators \| chr5:2944437-2945417 REVERSE LENGTH=326	SoyBase	E_val: 2.00E-23	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7KBG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH143 n=1 Tax=Medicago truncatula RepID=G7KBG8_MEDTR	SoyBase	E_val: 9.00E-119	ISS
UniRef100_UPI0002339F37	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339F37 related cluster n=1 Tax=unknown RepID=UPI0002339F37	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09880

Paralog	Evidence	Comments
Glyma06g09923	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g092900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09880

Limit To All Plant Sequences

>Glyma04g09880.2   sequence type=CDS   gene model=Glyma04g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAGATTGTGGAACCTGGGTACCGCATCTGCAATTTGGATGGCAATCACCAAATTTGAATCCCCTTGACATGGGGAAGCCAGTTGGTATTTCTGCAGCTATGAACCCTGGCTTTAATATGGTCTCTAGCAATGTGACAGTGCCTGCTTTCGTGTCCTCTGCACTGCCTCATTTGCAGTTAGGGCATTCCTATGAACCCAGTGGTTGGTCTTATTGTTTGCCCCCCTTTCGACAAGGATTTTCCCCTGCTCTGAACTTCAATGCTGAGGGAAAAACCCCTGCTGACCATGTGAAAACTTTTGGGGACAAAATTGGTCCCTATGGTGAATCCAGCTCCCATCAGAAACAATTTCTTGTTATTGACCAGACGGGTGGTCAAACGACTATTGTTTATAGCTCTATGTTTGGGAATCCTGATGAGTGCCTTGCTTCTTGGCATTCAAAACTGCATGGTGCTAACTATTTGAGGGGGAATGAACCTTCTTTCAGAAGAGATTTGAATTTGAATTTGAACTTGAAAGTGAATATGACTGAGCCAACTTTGGCTCATAAAGTGGATGAGAATCTGAAAACCAGCATTGAAAGTGAGATGCATGAAGACACCGAAGAAATTAATGCATTGCTTTACTCGGACAGCTATGGTTATTCTACCCAGGATGAGGATGATGATGATGAAGTTACTAGCACAGGGCACTCTCCGAGTACAATGACCACTCATGATAACTGTGAAGCCTTTAGGGGGGAAACCGCAGAAGAAGTTGCGAGCATTGCCGGGAAAACCAAGAAGAGGAAGCAATTGGATGGTTATTACGATGACATACAACTCATTGATACCGGCAGCTCTCAGAATCTGAACAAGTCTTCTGCCACAGGAGATGATGCAGAATCGAGATGTTCTAGTAATAACAACGAAGGATCCTTGTCTGGCAATAAGAAGATGAAAAAGGATAAGATACGCGACGTTCTGAGTATTCTGCGGAGCATAATTCCTGGTGGGAAGGATAAGGATCCGGCCATGCTTCTCGATGATGCCATACATTGCTTGAAAAACTTGAAACACAAGGCTCAAGCGCTCAGACTTGATGCCTTGTAA

Predicted protein sequences of Glyma04g09880

Limit To All Plant Sequences

>Glyma04g09880.2   sequence type=predicted peptide   gene model=Glyma04g09880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGDCGTWVPHLQFGWQSPNLNPLDMGKPVGISAAMNPGFNMVSSNVTVPAFVSSALPHLQLGHSYEPSGWSYCLPPFRQGFSPALNFNAEGKTPADHVKTFGDKIGPYGESSSHQKQFLVIDQTGGQTTIVYSSMFGNPDECLASWHSKLHGANYLRGNEPSFRRDLNLNLNLKVNMTEPTLAHKVDENLKTSIESEMHEDTEEINALLYSDSYGYSTQDEDDDDEVTSTGHSPSTMTTHDNCEAFRGETAEEVASIAGKTKKRKQLDGYYDDIQLIDTGSSQNLNKSSATGDDAESRCSSNNNEGSLSGNKKMKKDKIRDVLSILRSIIPGGKDKDPAMLLDDAIHCLKNLKHKAQALRLDAL*

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