Glyma04g09840 - SoyBase

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Report for Sequence Feature Glyma04g09840

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8115457
stop:	8118366
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65420	AT	Annotation by Michelle Graham. TAIR10: CYCLIN D4;1 \| chr5:26141592-26143750 REVERSE LENGTH=308	SoyBase	E_val: 2.00E-73	ISS
GO:0000080	GO-bp	Annotation by Michelle Graham. GO Biological Process: G1 phase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016538	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity	SoyBase	N/A	ISS
KOG0656	KOG	G1/S-specific cyclin D	JGI		ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF76	Panther	CYCLIN-D	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
PF02984	PFAM	Cyclin, C-terminal domain	JGI		ISS
UniRef100_I1JV43	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV43_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6T2Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin d2 n=1 Tax=Glycine max RepID=Q6T2Z7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09840

Paralog	Evidence	Comments
Glyma06g09910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g092800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09840

Limit To All Plant Sequences

>Glyma04g09840.1   sequence type=CDS   gene model=Glyma04g09840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCCAGTTTTGACTTTGCTTCTAGCCTCCTTTGCACAGAGGACAGCGCCGTTTTCGACGAGAGCCATAATAACGGGGGTACGATGATGTCGATGATGGGGGTGTACGAGGACACGTGGAGTCCTAGGAAGCGCCACTTTGATGAAGAGCCAGATGAGTTGCCATTGCTGAGTGATGAAAGCTTGGCGATGATGGTGGAAAAAGAGTGCCAACACTGGCCTGGTTTGCGTTGCTTGAATAAGCTTCAAACTGGGGATTTGGACTTCGGTGCCAGAATGGAGGCCGTTGATTGGATTCTCAAGGTCCGATCGCATTTTGGATATTGCTCGAGAAGTTCTTTGGTAATTCAAAATTACTTGGACCGATTCCTTTGTGCATATGAATTACCAAAGGGAAGAGTTTGGACAATGCAATTATTGGCTGTGGCGTGTTTATCTCTAGCAGCCAAATTAGATGAGACAGAAGTTCCACTCTCTCTTGATTTGCAGGTGGGTGAATCGAAGTTTTTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTCTTGTACTAAGCACATTGAAGTGGAGAATGCAAGCAATTACTCCTTTCACATTCCTTGATTACTTCCTTTGTAAGATCAATGATGATCAAAGTCCATTAAGGTCTTCAATTATGCGATCCATCCAACTCATATCGAGCACTGCAAGAGGGATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTATGTATGTCATGGGGGAAACCCAAACAGTTGACACTGGGAAAGCAACTTCTTTTCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGTGTCAAAATGATCCAAGAGTTGTCATGCAACAGTGGCTCTGCCAAGGATTCAAGCGCTTCTGTGACTTGCTTACCCCAAAGTCCAATAGGTGTGTTGGATGCTTTGTGCTTCAGCTACAAAAGTGATGACACAAATGCTGGTTCATCTGTTAATTCTTCACACAATAGCCCTGTTGCCAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCTGACCTGTTGTAG

Predicted protein sequences of Glyma04g09840

Limit To All Plant Sequences

>Glyma04g09840.1   sequence type=predicted peptide   gene model=Glyma04g09840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPSFDFASSLLCTEDSAVFDESHNNGGTMMSMMGVYEDTWSPRKRHFDEEPDELPLLSDESLAMMVEKECQHWPGLRCLNKLQTGDLDFGARMEAVDWILKVRSHFGYCSRSSLVIQNYLDRFLCAYELPKGRVWTMQLLAVACLSLAAKLDETEVPLSLDLQVGESKFLFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINDDQSPLRSSIMRSIQLISSTARGIDFLEFKPSEIAAAVAMYVMGETQTVDTGKATSFLIQHVEKERLLKCVKMIQELSCNSGSAKDSSASVTCLPQSPIGVLDALCFSYKSDDTNAGSSVNSSHNSPVAKRRKLNKTCGADLL*

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