Glyma04g09830 - SoyBase

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Report for Sequence Feature Glyma04g09830

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8090027
stop:	8093413
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33740	AT	Annotation by Michelle Graham. TAIR10: Nitrogen regulatory PII-like, alpha/beta \| chr2:14269590-14271523 FORWARD LENGTH=182	SoyBase	E_val: 4.00E-67	ISS
GO:0010038	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to metal ion	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG3338	KOG	Divalent cation tolerance-related protein	JGI		ISS
PTHR23419	Panther	DIVALENT CATION TOLERANCE CUTA-RELATED	JGI		ISS
PF03091	PFAM	CutA1 divalent ion tolerance protein	JGI		ISS
UniRef100_C6TLS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLS9_SOYBN	SoyBase	E_val: 4.00E-122	ISS
UniRef100_P93009	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein CutA, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=CUTA_ARATH	SoyBase	E_val: 2.00E-64	ISS

Expression Patterns of Glyma04g09830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09830

Paralog	Evidence	Comments
Glyma06g09900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g092700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g09830

Limit To All Plant Sequences

>Glyma04g09830.2   sequence type=transcript   gene model=Glyma04g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTACCACTTGTTTGCACGTGGCAAGCACAGTCAGTTATGAAAGTATAGAGGTGTGAGAGGGCGGAGCAGGATATAAGACTTCCCAAAATGACTTCTACACTCTGCTCCTCTACTTCCCTTTTCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTGCACGCCCTTCCATTCCTCTGCCCTCAAAACGGGATCCAAGTTCGGTATTCGAAGCCACTCCAGCACCAGAATGGAAGGGAGTAACTCCACTGTGCCGAGTATTGTTGTCTATGTCACTGTTCCCAACAAAGAAGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGTGTGCCAGAGGTGATCTCCTTACCCATCACTGGAGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGACTATCAAGTTTATAGCCCGAGGTGTGGTTTCCAGAGTTCTTCTGCTCGTGTGTTAAATAAAGTCAGTTTGTCATCTATGTAACTAGGCAATGATAATATTATGTAGAGGACGATGATCGGTCTTGTATTACTGCTAATGGCTCTGTTGACTATGATTTTATGCGAATAGACCTTTTCTTTGTGATTTTATGCATATTTGGCATTTTGTTTCTTATTTTTTCTGATTCTGTACCATCCATCTATCTGCTTTCGGG

Coding sequences of Glyma04g09830

Limit To All Plant Sequences

>Glyma04g09830.1   sequence type=CDS   gene model=Glyma04g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTACACTCTGCTCCTCTACTTCCCTTTTCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTGCACGCCCTTCCATTCCTCTGCCCTCAAAACGGGATCCAAGTTCGGTATTCGAAGCCACTCCAGCACCAGAATGGAAGGGAGTAACTCCACTGTGCCGAGTATTGTTGTCTATGTCACTGTTCCCAACAAAGAAGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATTATCAAGACTAGGCAATCCCTTCTGGAGGCATTGACAGAGCATGTCAAAACTAATCATGAATACGATGTGCCAGAGGTGATCTCCTTACCCATCACTGGAGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGA

>Glyma04g09830.2   sequence type=CDS   gene model=Glyma04g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTCTACACTCTGCTCCTCTACTTCCCTTTTCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTGCACGCCCTTCCATTCCTCTGCCCTCAAAACGGGATCCAAGTTCGGTATTCGAAGCCACTCCAGCACCAGAATGGAAGGGAGTAACTCCACTGTGCCGAGTATTGTTGTCTATGTCACTGTTCCCAACAAAGAAGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGTGTGCCAGAGGTGATCTCCTTACCCATCACTGGAGGCAATCTTAA

Predicted protein sequences of Glyma04g09830

Limit To All Plant Sequences

>Glyma04g09830.1   sequence type=predicted peptide   gene model=Glyma04g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSTLCSSTSLFSSSTLRRRLPLVGAFCMLSLGLSNLCTPFHSSALKTGSKFGIRSHSSTRMEGSNSTVPSIVVYVTVPNKEAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKTNHEYDVPEVISLPITGGNLKYLEWIKESTRD*

>Glyma04g09830.2   sequence type=predicted peptide   gene model=Glyma04g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSTLCSSTSLFSSSTLRRRLPLVGAFCMLSLGLSNLCTPFHSSALKTGSKFGIRSHSSTRMEGSNSTVPSIVVYVTVPNKEAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKCARGDLLTHHWRQS*

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