Glyma04g09811 - SoyBase

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Report for Sequence Feature Glyma04g09811

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8078013
stop:	8085519
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09811

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18475	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr5:6129255-6130775 REVERSE LENGTH=506	SoyBase	E_val: 6.00E-146	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7J565	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7J565_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9M5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9M5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09811

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g09811 not represented in the dataset	Glyma04g09811 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g09811 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma04g09811

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09811

Limit To All Plant Sequences

>Glyma04g09811.1   sequence type=CDS   gene model=Glyma04g09811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGAAAATGAAGGATAAAACACCATTCAAAACCAAAAGCGGACCCTCCCCCCGAAACCCTCCGAGGAAGCGTAAGTACATTTCTCACGATTCTGCCATAGACTTAATCAAATGCGAAAAGGATTCGCAGCACACCTTGAAGATATTCAACATGGTGTCAGAACAGAATGGGTTTCAACATGGTCTCGCTTGCTGCTACAAGTTCCACGCCGTCCACTGCGTCCTCCATCAGATGGCCTACGAAACTTGCAAGTTCCACGAGGGCATATTTGTCAACCTCATGAAACATTTTTCCAAATCCTCCATTCACGAAAAGGTGCTCCACGCCACTTGTCTCAACCTCTTGCAAGATTCGAATCGCGTCGATTTGGCGCGAAAATTGCTTTTACATGCCAAACGGGGTCTAACACATAAGCCAAACACGTGTGTGTTTAATATCTTGTCTTACCCTAATTTATTTACTTACTCGACCTTTATGGATGGACTATGTCGAAATGGGAGAGTCAAAGAAGCCTTTGAACTGTTTGAGGAAATGGTTTCAAGGGATCACATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAACGAGTTTTGCCGCAGAGGGAAACCTGACCGTGCTAGAAATGTGATCGAGTTTATGAAGAGTAACAGATGTTATCCAAATGTGTATAATTACTCAGCTCTGGTGGATGGTTTGTGTAAAGTTGGTAAGCTGGAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGGGTTCTGGTTTGAAACCAGATACGGTTACTTACACTAGTTTGATCAATTTCTTGTGTAGGAATGGCCAGATTGGTGAAGCTATGGGGTTGCTTAAGGAAATAAAGGAGAATACATGCCAGGCTGATACTGTTACATTCAATGTGATACTTGGGGGTTTGTGTAGAGAAGATAGATTTGAGGAGGCTCTGGATATGCTTGAGAAACTCCCACAACAAGGTGTATATTTGAACAAAGGTAGTTACAGGATTGTTCTGAACTCCTTGACCCAAAAATGTGAGTTGAAAAAGGCAAAGGAGTTGTTGGGACTAATGCTAAGTAGGGGGTTTCGACCCCATTATGCTACCTCAAATGAATTGTTGGTTTGTCTGTGTAAGGCGGGGATGGTTGATGATGCTGCTGTGGCACTATTTTACTTGGTGGAGATGGGGTTCCAGCCAGGACTTGAGTCTTGGGAAGTTTTAATTGGATTAATCTGCAGAGAAAGGAAGTTGTTGTATGTTTTTGAGCTGCTTAATGAATTAGTGATCACAAATTCTTGA

Predicted protein sequences of Glyma04g09811

Limit To All Plant Sequences

>Glyma04g09811.1   sequence type=predicted peptide   gene model=Glyma04g09811   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEKMKDKTPFKTKSGPSPRNPPRKRKYISHDSAIDLIKCEKDSQHTLKIFNMVSEQNGFQHGLACCYKFHAVHCVLHQMAYETCKFHEGIFVNLMKHFSKSSIHEKVLHATCLNLLQDSNRVDLARKLLLHAKRGLTHKPNTCVFNILSYPNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALFYLVEMGFQPGLESWEVLIGLICRERKLLYVFELLNELVITNS*

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