Glyma04g09800 - SoyBase

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Report for Sequence Feature Glyma04g09800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8071329
stop:	8076871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24620	AT	Annotation by Michelle Graham. TAIR10: phosphoglucose isomerase 1 \| chr4:12708972-12712610 REVERSE LENGTH=613	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009911	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0004347	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate isomerase activity	SoyBase	N/A	ISS
KOG2446	KOG	Glucose-6-phosphate isomerase	JGI		ISS
PTHR11469	Panther	GLUCOSE-6-PHOSPHATE ISOMERASE	JGI		ISS
PF00342	PFAM	Phosphoglucose isomerase	JGI		ISS
UniRef100_I1JV38	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JV38_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JV38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate isomerase n=1 Tax=Glycine max RepID=I1JV38_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09800

Paralog	Evidence	Comments
Glyma06g09880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g092400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g09800

Limit To All Plant Sequences

>Glyma04g09800.2   sequence type=transcript   gene model=Glyma04g09800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATTTGCTGCGGAGGGCAACAGACACAGAGAGAGAGAGAGGTGTTATTATTTGACTTATTTCATTGCAATAGCAACTAACAGCTAACAAGTATCACCACCCACCAATCAGCGCGTGACTCTGGTGAATATCACAAAAGAAAGACAGCACACAGAACCAGAAAACAACCTTCAACAAAGACAAAAACCGCTCTCTTCTCCAACGCTGTCTGTCACCTTAAAAAACAAAGTTCCACTTCATCAGATTCAACTAAACCACACCATTCGCATCAACACAGCACTTGTTTGTTCCCAACTCCGAAAAATATCATGCTCCTAACGTAAAATCCTCGGTTTCAACGTTCAACCGCGATCTCAAAAAACAAAACTATGGCATCACTCTCAGGCATTTGCTCCTCTTCCCCGACTCTCAAAAAATTCCCAAACCAATCCCCATCGTTGACCGACCCTCTCCGCAAAGACCACGTGTCCTTCCCCGCACGCCTCGCCGATCGGACCCTCAGCCTCGCGCCGCTCCGTGCGGTGGCTCGGGAGGTTTCCGACGGAGCGTTGGCGGCGGCGGTGAAGAAGGGGTTGGAGAAGGATCCGCGCGCGCTGTGGCGGAGATACGTGGGTTGGCTATACCAGCACAAGGAACTTGGGATTTACTTGGATGTGAGTCGGGTCGGGTTCAGTGATGAGTTCGTTAAGGAGATGGAACCCCGTTTCCAAGCGGCGTTTCGGGCGATGGAGGAGTTGGAGAAGGGCGCGATCGCGAATCCCGATGAGAGTCGCATGGTGGGACACTATTGGCTGAGGGACCCTAAGCGTGCGCCCAACTCGTTCCTTAAAACGCAGATTGAGAACACTCTCGACGCTGTTTGCAAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAGCCTCCTTCGTCTCCGGAGGGTCGATTTACTCAAATATTGTCTGTGGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAAGCATTGGCACCTGATAATCCTCCACTCAAGATAAGATTTGTGGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCACAACTTGGGCCTGAGCTAGCTTCAACACTTGTGATTGTGATATCAAAGAGTGGAGGTACTCCTGAGACCAGAAATGGTTTATTGGAAGTGCAGAAGGCCTTTCGTGAAGCAGGCTTGGATTTTCCTAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAGGGCTGGTTAGCTAGATTTCCTATGTTTGATTGGGTGGGAGGTAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCCCTTCAGGGCATTGATATTAGAGAAATGCTTGCCGGTGCATCATTGATGGATGAGGCTAATAGGAGTACTGTGTTAAGGAATAACCCTGCAGCTCTGCTGGCTTTATGTTGGTATTGGGCTACAGATGGTGTAGGATCCAAGGATATGGTTATTCTTCCATACAAGGACAGCCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGAAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAATTGAGGGAAGGTGTACACAATTTCTTTGTAACATTCATTGAGGTGCTACGTGATAGACCTCCTGGTCATGATTGGGAACTTGAACCTGGTGTCACATGCGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGATCAGCTCTGTATGCCAATAACCGAGAGTCCATCACAGTTACTGTACAAGAAGTGACACCTAGAACAGTTGGTGCTCTTATTGCACTCTATGAACGAGCAGTAGGAATTTATGCCTCCCTTGTCAACATAAATGCTTATCATCAACCAGGTGTGGAAGCTGGTAAAAAAGCAGCAGGTGAAGTACTAGCACTTCAGAAGCGAGTGTTGGCAGTGCTAAATGAGGCAAGCTGCAAAGAACCTGTAGAACCATTGACCCTCGAAGAAGTAGCAGACCGTTGCCATGCTCCTGAAGATATCGAAATGATTTACAAGATTATCGCACACATGGCTGCCAATGACAGAGCATTGATTGTCGAAGGCAGCTGTGGTTCACCACGCAGCATCAAGGTTTTTCTTGGGGAATGTAACATTGATGGGTTGTATGCATGAGTTAGACGACTACCAGAATTCATGTTTTGGTAATGTTGCAATTGTGTTTGAATACACGGACCAACAGAAGAGAAGTTGCCTGCAATAATTTGGTTTCAATGTTGAATCTCCATCATTAACGAAAGTGGAAATTTCTGTTAAGACAAATTCTTGAAAGTGTTTTGGTGTTCTGAATTGGAACTACGTGTAACCAAATGGAGAATCCAGTGGGTAAATATAATTAATAAAATTGTTCCTTTCGCTGCCTAAATTATTCATGTGGTGGGTTGCTTTCATTAGGGCAGCTCTTAGGTGCAAGCAGCAAAGCAATAACAAAATTAAAAGCATTTTGTGTAAACAGTAGCAGTAGCTCATGATCTGAAAAGGGGATCCATTTTGGTACAGTGAGAAATAGAGGGAAATCTGCTACTCTTATATTAAATGCAACGAATCCTTTCTGCT

Coding sequences of Glyma04g09800

Limit To All Plant Sequences

>Glyma04g09800.1   sequence type=CDS   gene model=Glyma04g09800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCACTCTCAGGCATTTGCTCCTCTTCCCCGACTCTCAAAAAATTCCCAAACCAATCCCCATCGTTGACCGACCCTCTCCGCAAAGACCACGTGTCCTTCCCCGCACGCCTCGCCGATCGGACCCTCAGCCTCGCGCCGCTCCGTGCGGTGGCTCGGGAGGTTTCCGACGGAGCGTTGGCGGCGGCGGTGAAGAAGGGGTTGGAGAAGGATCCGCGCGCGCTGTGGCGGAGATACGTGGGTTGGCTATACCAGCACAAGGAACTTGGGATTTACTTGGATGTGAGTCGGGTCGGGTTCAGTGATGAGTTCGTTAAGGAGATGGAACCCCGTTTCCAAGCGGCGTTTCGGGCGATGGAGGAGTTGGAGAAGGGCGCGATCGCGAATCCCGATGAGAGTCGCATGGTGGGACACTATTGGCTGAGGGACCCTAAGCGTGCGCCCAACTCGTTCCTTAAAACGCAGATTGAGAACACTCTCGACGCTGTTTGCAAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAGCCTCCTTCGTCTCCGGAGGGTCGATTTACTCAAATATTGTCTGTGGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAAGCATTGGCACCTGATAATCCTCCACTCAAGATAAGATTTGTGGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCACAACTTGGGCCTGAGCTAGCTTCAACACTTGTGATTGTGATATCAAAGAGTGGAGGTACTCCTGAGACCAGAAATGGTTTATTGGAAGTGCAGAAGGCCTTTCGTGAAGCAGGCTTGGATTTTCCTAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAGGGCTGGTTAGCTAGATTTCCTATGTTTGATTGGGTGGGAGGTAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCCCTTCAGGGCATTGATATTAGAGAAATGCTTGCCGGTGCATCATTGATGGATGAGGCTAATAGGAGTACTGTGTTAAGGAATAACCCTGCAGCTCTGCTGGCTTTATGTTGGTATTGGGCTACAGATGGTGTAGGATCCAAGGATATGGTTATTCTTCCATACAAGGACAGCCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGAAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAATTGAGGGAAGGTGTACACAATTTCTTTGTAACATTCATTGAGGTGCTACGTGATAGACCTCCTGGTCATGATTGGGAACTTGAACCTGGTGTCACATGCGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGATCAGCTCTGTATGCCAATAACCGAGAGTCCATCACAGTTACTGTACAAGAAGTGACACCTAGAACAGTTGGTGCTCTTATTGCACTCTATGAACGAGCAGTAGGAATTTATGCCTCCCTTGTCAACATAAATGCTTATCATCAACCAGGTGTGGAAGCTGGTAAAAAAGCAGCAGGTGAAGTACTAGCACTTCAGAAGCGAGTGTTGGCAGTGCTAAATGAGGCAAGCTGCAAAGAACCTGTAGAACCATTGACCCTCGAAGAAGTAGCAGACCGTTGCCATGCTCCTGAAGATGTACATACATTATCCCTCTTTATTTCTTCTTCAATTATGTGTACTACCCTGTTTATTAAGAATCATCAAAGTTCAATAACATTTTTCACTTGTATGCAGATCGAAATGATTTACAAGATTATCGCACACATGGCTGCCAATGACAGAGCATTGATTGTCGAAGGCAGCTGTGGTTCACCACGCAGCATCAAGGTTTTTCTTGGGGAATGTAACATTGATGGGTTGTATGCATGA

>Glyma04g09800.2   sequence type=CDS   gene model=Glyma04g09800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCACTCTCAGGCATTTGCTCCTCTTCCCCGACTCTCAAAAAATTCCCAAACCAATCCCCATCGTTGACCGACCCTCTCCGCAAAGACCACGTGTCCTTCCCCGCACGCCTCGCCGATCGGACCCTCAGCCTCGCGCCGCTCCGTGCGGTGGCTCGGGAGGTTTCCGACGGAGCGTTGGCGGCGGCGGTGAAGAAGGGGTTGGAGAAGGATCCGCGCGCGCTGTGGCGGAGATACGTGGGTTGGCTATACCAGCACAAGGAACTTGGGATTTACTTGGATGTGAGTCGGGTCGGGTTCAGTGATGAGTTCGTTAAGGAGATGGAACCCCGTTTCCAAGCGGCGTTTCGGGCGATGGAGGAGTTGGAGAAGGGCGCGATCGCGAATCCCGATGAGAGTCGCATGGTGGGACACTATTGGCTGAGGGACCCTAAGCGTGCGCCCAACTCGTTCCTTAAAACGCAGATTGAGAACACTCTCGACGCTGTTTGCAAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAGCCTCCTTCGTCTCCGGAGGGTCGATTTACTCAAATATTGTCTGTGGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAAGCATTGGCACCTGATAATCCTCCACTCAAGATAAGATTTGTGGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCACAACTTGGGCCTGAGCTAGCTTCAACACTTGTGATTGTGATATCAAAGAGTGGAGGTACTCCTGAGACCAGAAATGGTTTATTGGAAGTGCAGAAGGCCTTTCGTGAAGCAGGCTTGGATTTTCCTAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAGGGCTGGTTAGCTAGATTTCCTATGTTTGATTGGGTGGGAGGTAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCCCTTCAGGGCATTGATATTAGAGAAATGCTTGCCGGTGCATCATTGATGGATGAGGCTAATAGGAGTACTGTGTTAAGGAATAACCCTGCAGCTCTGCTGGCTTTATGTTGGTATTGGGCTACAGATGGTGTAGGATCCAAGGATATGGTTATTCTTCCATACAAGGACAGCCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGTTAATCAAGGAATTAGTGTCTATGGAAACAAAGGAAGCACAGATCAACATGCCTATATTCAACAATTGAGGGAAGGTGTACACAATTTCTTTGTAACATTCATTGAGGTGCTACGTGATAGACCTCCTGGTCATGATTGGGAACTTGAACCTGGTGTCACATGCGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGATCAGCTCTGTATGCCAATAACCGAGAGTCCATCACAGTTACTGTACAAGAAGTGACACCTAGAACAGTTGGTGCTCTTATTGCACTCTATGAACGAGCAGTAGGAATTTATGCCTCCCTTGTCAACATAAATGCTTATCATCAACCAGGTGTGGAAGCTGGTAAAAAAGCAGCAGGTGAAGTACTAGCACTTCAGAAGCGAGTGTTGGCAGTGCTAAATGAGGCAAGCTGCAAAGAACCTGTAGAACCATTGACCCTCGAAGAAGTAGCAGACCGTTGCCATGCTCCTGAAGATATCGAAATGATTTACAAGATTATCGCACACATGGCTGCCAATGACAGAGCATTGATTGTCGAAGGCAGCTGTGGTTCACCACGCAGCATCAAGGTTTTTCTTGGGGAATGTAACATTGATGGGTTGTATGCATGA

Predicted protein sequences of Glyma04g09800

Limit To All Plant Sequences

>Glyma04g09800.1   sequence type=predicted peptide   gene model=Glyma04g09800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSGICSSSPTLKKFPNQSPSLTDPLRKDHVSFPARLADRTLSLAPLRAVAREVSDGALAAAVKKGLEKDPRALWRRYVGWLYQHKELGIYLDVSRVGFSDEFVKEMEPRFQAAFRAMEELEKGAIANPDESRMVGHYWLRDPKRAPNSFLKTQIENTLDAVCKFANDVVSGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTPRTVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLEEVADRCHAPEDVHTLSLFISSSIMCTTLFIKNHQSSITFFTCMQIEMIYKIIAHMAANDRALIVEGSCGSPRSIKVFLGECNIDGLYA*

>Glyma04g09800.2   sequence type=predicted peptide   gene model=Glyma04g09800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSGICSSSPTLKKFPNQSPSLTDPLRKDHVSFPARLADRTLSLAPLRAVAREVSDGALAAAVKKGLEKDPRALWRRYVGWLYQHKELGIYLDVSRVGFSDEFVKEMEPRFQAAFRAMEELEKGAIANPDESRMVGHYWLRDPKRAPNSFLKTQIENTLDAVCKFANDVVSGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANNRESITVTVQEVTPRTVGALIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLEEVADRCHAPEDIEMIYKIIAHMAANDRALIVEGSCGSPRSIKVFLGECNIDGLYA*

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