Report for Sequence Feature Glyma04g09690
Feature Type: gene_model
Chromosome: Gm04
Start: 7963163
stop: 7964173
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g09690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G05810 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:1746938-1747999 FORWARD LENGTH=353
SoyBase E_val: 3.00E-73 ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR14155 Panther
RING FINGER PROTEIN 6/12/38
JGI ISS
PTHR14155:SF2 Panther
RING-FINGER PROTEIN
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7J546 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7J546_MEDTR
SoyBase E_val: 2.00E-88 ISS
UniRef100_UPI0002339F33 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339F33 related cluster n=1 Tax=unknown RepID=UPI0002339F33
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g09690
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma04g09690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g091400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g09690
Coding sequences of Glyma04g09690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g09690.2 sequence type=CDS gene model=Glyma04g09690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCATGCCACCTTCTTCCTTCACCCTCCTCCTCACTCTCCTTCTATTATTCCTTACATATGAAGCAGAGAGCGGAGAAACTCCACCCCCTACTCCCCCGCCGCCGTTCAGACCCGGCATAGCGGTGCTGGTGTGCGTTTTGACAACCATAATCTCCCTTACATCGCTCCTCCTCCTCTACATCAAACACTGCAACGGCGGCATCCCAGACGGCGGAGGCGGAAACTCGGCTCCGTGGACGGTGGCGCCCTTCTCCGGAAGGAAAAACTCCGGCATTGACCGGTCCGTGGTGGAATCGTTGCCGGTCTTCAGATTCGGAGCGCTGCGGGGGCAAAAGGAAGGACTCGATTGCGCGGTGTGCCTGAACAAGTTCGAGGCCGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTCTGCCGCTACCGCGTGGATCCGGAGGACATTCTCCTGGTGGAGGACGCAAAGCCTTTCCGCCAGAGTCATCAACAACAACGGAACAAGGAAGAGGAACGCGTGCGTTTGAATTTGGACCTGGAGAAGCAGGAGATAGTGGAGTCTCGACGGAGGCATTCGTCCGTTGGGGTGGGGGAAGGAGAAACAACGGAGGAGCAGCAGCAGAGTCGGAGGTGGACGACGTCGTTTAGAAGGTCATTGGATAGCATTAGCGCCACATCGAGAAAGAAGAACGAGAGCGTTGGGGTTGGTTGTTTTGTGCGTCCCAGAAAAGACGGGATGTTGTTGACGCAAGAGACGGAGAGGGCAAGCGTGGAACGGAGGTTGGAGCACCGGATTATTGTCTCCCCGGGCCAGGGCCCGGGCCCAGGCCCAGGCCCAGGTCCGTGTGGGCTCGAGCAGCGGTGGAGCGACTTGCAGGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGATGAGGGACAGTTGGAATGGCAGAGGGAGTGGTGTCTGA
Predicted protein sequences of Glyma04g09690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g09690.2 sequence type=predicted peptide gene model=Glyma04g09690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLMPPSSFTLLLTLLLLFLTYEAESGETPPPTPPPPFRPGIAVLVCVLTTIISLTSLLLLYIKHCNGGIPDGGGGNSAPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDAKPFRQSHQQQRNKEEERVRLNLDLEKQEIVESRRRHSSVGVGEGETTEEQQQSRRWTTSFRRSLDSISATSRKKNESVGVGCFVRPRKDGMLLTQETERASVERRLEHRIIVSPGQGPGPGPGPGPCGLEQRWSDLQASDLLYLTSEMIMMRDSWNGRGSGV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
