Glyma04g09640 - SoyBase

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Report for Sequence Feature Glyma04g09640

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7927256
stop:	7929813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09900	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR-like) superfamily protein \| chr1:3218133-3219929 FORWARD LENGTH=598	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7KJV7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KJV7_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339F2F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339F2F related cluster n=1 Tax=unknown RepID=UPI0002339F2F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09640

Paralog	Evidence	Comments
Glyma06g09740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g090900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09640

Limit To All Plant Sequences

>Glyma04g09640.1   sequence type=CDS   gene model=Glyma04g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTAGTGGCACCAGCCGAACAGGTTTGCTCATTTCACCACTTCCACATAACCAGAGCTAGGGTTTCTGATAACTCCATTTCTCGTCCTTTCGTTCTATATCCTGATAGTAGTGTTAGTCATCATTTTTCAAAATTGAAGGCAACTAGGTCTAGAAAGCGTTTAGAAAATCGCGTTTCTGCTGTTTCCAAGTCCGAAGCTTCTGGTTTGAACGGTAGATTGCAACAAATTGTGAGCACCCCAAACGGGGACTTGAACGTCATAGGCATGGAATCTTCGCCCATTGGGGTGAACGGTTCCCGGAGCTTCGAGGAGTTTGCGAGTAACATTCATCTCCGGAAGTTGGTTAGAAATGGAGAGTTAGAGGAAGGGCTTAAGTTTCTGGAGCGCATGATTTACCAAGGAGATATCCCTGATGTCATTGCATGCACCAGTTTGATTCGCGGGTTTTGCAGGAGTGGAAAGACTAAGAAGGCCACAAGAATCATGGAGATTCTGGAGAATTCTGGTGCTGTTCCTGATGTGATAACTTACAATGTTTTGATTGGTGGTTATTGCAAATCTGGGGAGATAGACAAAGCCTTGGAGGTTTTGGAGCGAATGAGTGTTGCTCCGGATGTTGTTACTTATAACACAATTCTGCGTAGTTTGTGCGATAGTGGGAAGCTGAAGGAGGCAATGGAGGTTCTTGACAGGCAGCTGCAGAGGGAGTGTTATCCCGATGTGATTACTTACACAATTTTAATTGAAGCAACTTGTAATGATAGTGGCGTTGGTCAGGCGATGAAGCTGTTAGATGAGATGAGGAAGAAAGGGTGCAAACCCGATGTGGTCACTTACAATGTTCTTATCAATGGTATTTGCAAGGAGGGTCGGTTGGATGAGGCAATTAAGTTTTTGAATAACATGCCTTCGTATGGTTGTAAACCGAATGTGATTACTCATAATATTATTTTGCGTAGCATGTGTAGCACTGGGAGATGGATGGATGCTGAGAGGCTGTTATCAGATATGCTTAGGAAGGGTTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCTTGTGCCGGAAACGATTACTGGGTAGAGCCATTGATGTCTTGGAGAAAATGCCAAAGCACGGTTGTGTTCCAAATTCCTTGAGTTACAATCCATTGCTTCATGGGTTTTGTCAAGAGAAAAAGATGGATAGGGCAATTGAGTATTTGGAAATAATGGTGTCTAGGGGTTGTTACCCAGATATAGTGACCTATAACACTTTGCTTACAGCACTATGCAAAGACGGGAAGGTGGATGCTGCAGTTGAAATACTGAATCAACTAAGTAGCAAGGGATGCTCTCCTGTTTTAATTACTTATAATACAGTTATTGATGGTCTTACAAAGGTGGGAAAAACCGAGTATGCTGTGGAACTGTTAGAAGAGATGCGCAGAAAGGGTCTTAAACCTGATATAATTACATACTCTACACTGCTTCGGGGACTTGGTCGTGAAGGAAAGGTTGATGAGGCTATAAAAATTTTCCATGACATGGAAGGATTAAGTATTAAGCCCAGTGCTGTCACTTACAATGCAATCATGTTGGGACTTTGTAAGGCTCAGCAGACTAGTCGTGCAATTGATTTTCTGGCTTATATGGTAGAAAAAGGATGCAAACCTACCGAAGCTACATATACCATTCTTATAGAAGGCATTGCTGATGAAGGATTAGCCGAGGAAGCTTTGGAGTTGTTGAATGAGTTGTGCTCCAGAGGATTTGTGAAGAAAAGTTCGGCTGAACAGGTAGTAGTCAAGATGTAG

Predicted protein sequences of Glyma04g09640

Limit To All Plant Sequences

>Glyma04g09640.1   sequence type=predicted peptide   gene model=Glyma04g09640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLVAPAEQVCSFHHFHITRARVSDNSISRPFVLYPDSSVSHHFSKLKATRSRKRLENRVSAVSKSEASGLNGRLQQIVSTPNGDLNVIGMESSPIGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQVVVKM*

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