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Report for Sequence Feature Glyma04g09610

Feature Type:gene_model
Chromosome:Gm04
Start:7889806
stop:7895952
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g09610
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24400AT Annotation by Michelle Graham. TAIR10: CBL-interacting protein kinase 8 | chr4:12617379-12620481 FORWARD LENGTH=445 SoyBaseE_val: 0ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0583 KOG Serine/threonine protein kinase JGI ISS
PTHR24344Panther SERINE/THREONINE-PROTEIN KINASE CDS1 JGI ISS
PTHR24344:SF45Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
PF03822PFAM NAF domain JGI ISS
UniRef100_Q53VM2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=1 Tax=Lotus japonicus RepID=Q53VM2_LOTJA SoyBaseE_val: 0ISS
UniRef100_UPI00023397DBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023397DB related cluster n=1 Tax=unknown RepID=UPI00023397DB SoyBaseE_val: 0ISS

Expression Patterns of Glyma04g09610
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09610
ParalogEvidenceComments
Glyma06g09700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09610 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g090500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g09610
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g09610
>Glyma04g09610.1   sequence type=CDS   gene model=Glyma04g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGTGAGGAAAGTTGGGAAGTACGAGATTGGGAGGACGATTGGGGAGGGAACCTTTGCGAAGGTGAAATTCGCTCAGAACACCGAAACTGGTGAGAGCGTGGCCATGAAGGTGCTCGACCGTAGCACCATCATCAAGCACAAGATGGCCGACCAGATCAAGAGGGAGATTTCCATCATGAAGCTAGTTAGGCATCCTTATGTTGTTCGCCTTCACGAGGTTCTTGCAAGCCGTACCAAGATTTATATCATATTGGAGTTCATCACGGGTGGTGAATTGTTTGATAAAATTATACACCATGGCCGTCTTAGTGAAACTGACTCTAGAAGATATTTCCAGCAGCTTATTGACGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTTTTACTCGATTCACTGGGAAATATAAAGATTTCCGATTTTGGTTTGAGTGCATTTCCTGAGCAGGGGGTGAGTATCCTTCGGACAACTTGTGGGACTCCAAACTATGTGGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCTGGATATCTTCCTTTTGATGAGCTTGATCTAACCACCTTATATAGTAAGATTGAGAGAGCAGAGTTTTCATGCCCTCCTTGGTTTCCAGTGGGAGCAAAATTGTTGATACATAGAATTTTGGACCCAAATCCTGAAACTCGTATAACAATTGAGCATATAAGAAATGACGAATGGTTTCAGAGGAGTTATGTTCCTGTCAGTCTTCTTGAGTATGAAGATGTAAACCTTGATGATGTAAATGCTGCTTTTGACGATGCTGAGGAACTGAGGGCTGATCAACAATGTGACAACGATGACATGGGTCCTCTAATGCTTAATGCATTTGACTTGATAATTTTGTCTCAAGGCTTAAATCTTGCAACAATCTTTGATCGTGGGCAGGACTCTGTGAAGTACCAAACCCGTTTTATCTCTCAAAAACCAGCAAAGGTGGTTTTATCAAGTATGGAAGTTGTGGCACAATCAATGGGATTTAAGACGCATATTCGCAACTACAAGATGAGGGTGGAGGGTGTTTCAGCAAATAAAACATCCTATTTCTCTGTTATCCTGGAAATTTTTGAAGTGGCTCCTACATTTTATATGGTGGACATTCAGAAAGCAGCTGGAGATACTGGTGAATACCTCAAGTTTTACAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAACCGCCCCATGAAGCAAGCAAATCAAGGATCTCCAAGACCAAAAGCAAAAGACGATAG
Predicted protein sequences of Glyma04g09610
>Glyma04g09610.1   sequence type=predicted peptide   gene model=Glyma04g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVVRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMADQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIIHHGRLSETDSRRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSAFPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKIERAEFSCPPWFPVGAKLLIHRILDPNPETRITIEHIRNDEWFQRSYVPVSLLEYEDVNLDDVNAAFDDAEELRADQQCDNDDMGPLMLNAFDLIILSQGLNLATIFDRGQDSVKYQTRFISQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGVSANKTSYFSVILEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHEASKSRISKTKSKRR*






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