Glyma04g09600 - SoyBase

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Report for Sequence Feature Glyma04g09600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7882228
stop:	7887617
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G28670	AT	Annotation by Michelle Graham. TAIR10: oxidoreductase, zinc-binding dehydrogenase family protein \| chr3:10744183-10746983 FORWARD LENGTH=491	SoyBase	E_val: 4.00E-161	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG4703	KOG	Uncharacterized conserved protein	JGI		ISS
UniRef100_G7J454	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Odr-4-like protein n=1 Tax=Medicago truncatula RepID=G7J454_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023397DA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023397DA related cluster n=1 Tax=unknown RepID=UPI00023397DA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09600

Paralog	Evidence	Comments
Glyma06g09690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g090400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09600

Limit To All Plant Sequences

>Glyma04g09600.1   sequence type=CDS   gene model=Glyma04g09600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAAGGCGTAATCGGAGAAGAAACGCGACTCAAATTAGCGGAGGGTCTTCTCAGCCAATCCGCAGTTCCATCCGAGGTGGGTCTTCTAATCGGCAAGTTCAGCTCCTCCTTGGGCCGGGCCTTTCTCTTCGACCTCATTCCCACCCCACACAACGACTCCGCCGAGCCCGCCTGCGCCCTCACCGACCCCGACAAGAAGAAGGCCACCAAATCCAACCCCGCCGATTCCTCTTCCTTGTTCATCGACAAGGATTGGGTCGCCGAACATGCCCGCCAGGTTTCTAGAATGCTCGTCGGCGGCATCAAGGTCGTCGGCCTATACGTTTGGGTTAGCGATGCCGCATTCAAAAATTCAACCATAATGCTTTGCCAGACCGTGAAGGGTGTTGCTGAGGCAGCTCCGGTTTTGGAGGGTGATTGGGATGAGAGGCTGCTTCTTCACATTTCTTATAGCCCGAGGAGGTGGAATTGTAGAAACTGCTCACTGTCTTCGAATATTACATCAAGTAGTTTGCGGCCTTGTGACTTTAAGATGGGGAAGGTCTTAACTTCCCTTCAGACGTTCAAGTGCATGCACAACTTTAACCTGAGGTTACCTATATTACGCGACAGTGCATCAAAGTTCCAGACATTGAGTGATGTTCTTCGTCATACAATATCTATTCATGCCAAAGAGCTTGCAGGTGCAAAGGCCTTGATTGATGGTAAATTGGTTGTTGAGAGTGAGTCATATTCATCAGATGGTGTGCATGAAGTTGAATTGCTTCTTTCATTTCTGAACGATAGTTCTATTGAAGCATGCAGCCAAGGAGATGTTGTTGGTATTCTTTCATTTAGTGGCTTGATATGTTCTTTTGCATATCTGAATTCAAAAGAGCCTAATTCACAAGCCATCACTGATATAAAGGGAGATATCATTACGAGTCTGCAAAGTAGATTGGATATAATCTGTGATGAGGTAGATGTTGACTCTGGTAACAATCATGATGTTGGAAGCCAAGTAAGCAATGAAATATCGGCTGAAAAGCCTGTTCCCCAACTAGTGTTGCACTTATTGAGAAAAGGATGCAGCCTTCCATTTCCTAGAAGAGTCTTTGCACCATGGCTAGCAGGGGTGTATGTATGTGATTATTTGCAACCTTCTGAAACTGTTGAGGTTTTAAAAGATCATAGTATGGAATTACTATCCATGAAAGCTCCAGCTGATGTCTCTACAATTTTGGAGCCAGAGAAAGAAGAGATATCTTTCAAAACTAAATCTTTCTGGGATGTGGTAGTCCCCTCCTATTCAGAAATTCACCTCATGGAAGACAAGAGCAAACGTGATGGCGGAAGCGAGAGTCCAAGTAGTAAAACTGTGAAGCCGGGTCGCATTAATGTTGTCGCCGCTGGTCTCATCCTTCTATTGTCTGTGTTAGTTGGTTCTGTGCTATTCGCCCTGAAGGGTTGA

Predicted protein sequences of Glyma04g09600

Limit To All Plant Sequences

>Glyma04g09600.1   sequence type=predicted peptide   gene model=Glyma04g09600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKGVIGEETRLKLAEGLLSQSAVPSEVGLLIGKFSSSLGRAFLFDLIPTPHNDSAEPACALTDPDKKKATKSNPADSSSLFIDKDWVAEHARQVSRMLVGGIKVVGLYVWVSDAAFKNSTIMLCQTVKGVAEAAPVLEGDWDERLLLHISYSPRRWNCRNCSLSSNITSSSLRPCDFKMGKVLTSLQTFKCMHNFNLRLPILRDSASKFQTLSDVLRHTISIHAKELAGAKALIDGKLVVESESYSSDGVHEVELLLSFLNDSSIEACSQGDVVGILSFSGLICSFAYLNSKEPNSQAITDIKGDIITSLQSRLDIICDEVDVDSGNNHDVGSQVSNEISAEKPVPQLVLHLLRKGCSLPFPRRVFAPWLAGVYVCDYLQPSETVEVLKDHSMELLSMKAPADVSTILEPEKEEISFKTKSFWDVVVPSYSEIHLMEDKSKRDGGSESPSSKTVKPGRINVVAAGLILLLSVLVGSVLFALKG*

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