Glyma04g09580 - SoyBase

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Report for Sequence Feature Glyma04g09580

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7853154
stop:	7855171
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65640	AT	Annotation by Michelle Graham. TAIR10: beta HLH protein 93 \| chr5:26237137-26238904 FORWARD LENGTH=351	SoyBase	E_val: 2.00E-82	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7J450	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH93 n=1 Tax=Medicago truncatula RepID=G7J450_MEDTR	SoyBase	E_val: 1.00E-178	ISS
UniRef100_I1JV18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09580

Paralog	Evidence	Comments
Glyma06g09670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g090100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09580

Limit To All Plant Sequences

>Glyma04g09580.1   sequence type=CDS   gene model=Glyma04g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTTATGACCAGGATTTCTTGGAGGAATTAATGACTCTAAGAAGAGAAACATGGGACACCAATCCAAGAACAGAAGAAAACCAGTTCTTTGATGGTGGGAGTTTTGACTGCTTTGATCAAAACTCTCTACCTTACCTTCCAAACTCTTCTTGTGGTCAAGAAGTTCCTCAAACTTACAATAACGACTACCCCTTCAGTGAAATCTATGGCTGCTTACTTGATGAATCATCACCACAGATTATGGATTCATTCTATAGCACCCTTGATACTCCACTCAATACCCCTCCATTTCTTGGTCAAGAGGATTATCCAATATTGTCTATGATGGAAGAAGAGGAGCAGGGTTTGCTTGGGGAAGAGCTTAAGAATTTGGAGCTGCAAACCACATGTAAAATGGAGCCAACCCAATCCTCTGAAATGCCGGTTTTCAACATGGGAACGGGTCTGGAAAGAAAGAACCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGGTTAAACGACCGGCTCTCGATGCTAAGAGCAATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTGCAGCAAGAAGTAGAAGTAGATTCAAACATGGCAGGCATTTTCAAAGATGTAAAACCAAATGAAATCCTAGTGAGAAATTCACCCAAGTTTGAGGTGGAGAGGAGTGTGGACACCCGGGTGGAAATTTGCTGTGCAGGGAAGCCAGGCTTGATACTATCTACAGTAAACACTCTGGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCATGCTCAGAGGAATCGGAGCAAAGGACGATGCTGAGTTCTGAAGACATAAAGCAAGCGTTGTTTAGAAGTGCAGGATATGGAGGAAGATGTTTATGA

Predicted protein sequences of Glyma04g09580

Limit To All Plant Sequences

>Glyma04g09580.1   sequence type=predicted peptide   gene model=Glyma04g09580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFYDQDFLEELMTLRRETWDTNPRTEENQFFDGGSFDCFDQNSLPYLPNSSCGQEVPQTYNNDYPFSEIYGCLLDESSPQIMDSFYSTLDTPLNTPPFLGQEDYPILSMMEEEEQGLLGEELKNLELQTTCKMEPTQSSEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVDSNMAGIFKDVKPNEILVRNSPKFEVERSVDTRVEICCAGKPGLILSTVNTLEALGLEIQQCVISCFNDFTMQASCSEESEQRTMLSSEDIKQALFRSAGYGGRCL*

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