Glyma04g09550 - SoyBase

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Report for Sequence Feature Glyma04g09550

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7820489
stop:	7825336
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22670	AT	Annotation by Michelle Graham. TAIR10: indoleacetic acid-induced protein 8 \| chr2:9637136-9638459 FORWARD LENGTH=321	SoyBase	E_val: 1.00E-119	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010311	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root formation	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
UniRef100_C6TKM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TKM2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E5L879	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-induced protein 9 n=1 Tax=Vitis vinifera RepID=E5L879_VITVI	SoyBase	E_val: 7.00E-170	ISS

Expression Patterns of Glyma04g09550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09550

Paralog	Evidence	Comments
Glyma06g09650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g089900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09550

Limit To All Plant Sequences

>Glyma04g09550.1   sequence type=CDS   gene model=Glyma04g09550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCGCCAGTGCTAAGCATGGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGGTTCCTCATCAACCGCCATGGAAAGTGTGTGTCTCAAGAGCTTAGAATTTAAAGAACGCAACTACATGGGTTCATCTGATTGTTCTTCTGTGGACAGCTCGGTTCCGTCCTTCTCAGAAGAGTGTAAAAGTAATCTGAACCTGAAAGCCACTGAACTCAGGCTTGGGCTTCCGGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTAGATGAAAAACCTTTGTTTCCGTTGCATCCTTTGACTGATGATCACCATTCTTCAGCCAAAACTGCTGTCTTGGGAAACAAAAGAGGGTTCTCTGATGCCATGAATGGCCTCTCCTCCGAGGGGAAATTCCTAGTTGATTTGGAGGCCGCCAATCCGATACTATCTCCCAGGCCTGCTTGTAACTTGGGATTAAAACCTGGTTCTACCCTTGATAAAGTTGGGGCTCAGCAAACCAAAATGAAAGAAGTAGCAACAACAAAGGGCAACGAAACTAGACCAAGTATTGATGGTTCTGCAAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCCGGAAAAATTCATTGGCAACTACTTCAAAGAACAATGAAGTAGTTGATGGAAAAAAGGGGGTTGGTGCACTGTTCGTCAAGGTCAGTATGGATGGTGCCCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTATAAGTAAATGTGGATCTCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGACCTAG

Predicted protein sequences of Glyma04g09550

Limit To All Plant Sequences

>Glyma04g09550.1   sequence type=predicted peptide   gene model=Glyma04g09550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPVLSMGEEEGKSNVTLLGSSSTAMESVCLKSLEFKERNYMGSSDCSSVDSSVPSFSEECKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQLDEKPLFPLHPLTDDHHSSAKTAVLGNKRGFSDAMNGLSSEGKFLVDLEAANPILSPRPACNLGLKPGSTLDKVGAQQTKMKEVATTKGNETRPSIDGSANNNSAPATKAQVVGWPPIRSFRKNSLATTSKNNEVVDGKKGVGALFVKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISKCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT*

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