SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G27595 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961 | SoyBase | E_val: 0 | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| KOG1895 | KOG | mRNA cleavage and polyadenylation factor II complex, subunit PTA1 | JGI | ISS | |
| PTHR15245 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR15245:SF6 | Panther | gb def: T22C5.3 | JGI | ISS | |
| PF11935 | PFAM | Domain of unknown function (DUF3453) | JGI | ISS | |
| PF12295 | PFAM | Symplekin tight junction protein C terminal | JGI | ISS | |
| UniRef100_D7KBR7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: T17H3.9 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KBR7_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339F2E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339F2E related cluster n=1 Tax=unknown RepID=UPI0002339F2E | SoyBase | E_val: 0 | ISS |
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Glyma04g09485 not represented in the dataset |
Glyma04g09485 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g09585 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g089400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g09485.1 sequence type=CDS gene model=Glyma04g09485 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCTCCTACCAGGGACCAAGTCCTCTCTCTCCTCGCCGCCGCCAACAACCACGGCGACCTCGCCGTTAAAACCTCATCGTTGAAACAGGCCAAGGACCTTCTTCTCTCCATTGACCCCTCTCTCGCCGCCGACCTCTTCCCTTACTTGATTGAGCTTCAGTCTTCTCCCGAGAGCCTCGTTCGCAAATTGCTCATTCAGATAATTGAGGAGATTGGTTTTAAAGCAGTTGAGCACTCTCCTACGATGATATCTTTACTATTAACATTTTTACGAGATGGCGATGCAATTGTTGTAAAGCAGTCTATTGTTAGTGGCACAAATATCTTCTGTAGTGTTTTTGAGGAGTTGATTGTGCAGTTTCAACAATATGGTAAAGTTGAGAGGTGGCTAGAAGATATTTGGATGTGGATGCTTAGGTTCAAGGATGCTGTTTTTGGGATTGCTGTGGAGCCTGCTTCTGTTGGAATAAAGTTGCTGGCCCTGAAGTTCTTGGAAACGTTTGTATTACTCTTTTCATCTGACATCGGTGATACTGAGAAATTAGCCACAAAAGGAATTAGGCAAGCTGTTAATGTCGAATGGTTGGTTGGTGGTCACCCTCACCCTGTTCTTGATCCAGTGGTGCTCATATCAGATGCAAATAGGACTATTGGCATTCTATTAAATTTATTGCTGTCGGTTGGCAGTCTTCCTGGTTGCTTGACTATTACTGTTGTAAATTGTTTAGCAGCCATCGCAAGGAAAAGGCCACAACACTATGATACTATTCTTTCAGCATTGCTTGATTTTGATCCAGATTTTCAAAGAGTGAAAGGATGTCATGTTACTAGTATTCAGTACTCCTTCAGAACAGCTTTTTTAGGATTTCTTAGGTGCACTTATTCACCAATACTAGAGTCTAGAGAAAGACTAATAAGGAGCCTGCGAGCTATGAATGCGGGGGATGCTGCTGATCAGGTCATTCGGCAAGTTGATAAAATGATTAAAAATGGTGATCGTTCTACCCGCGATGCACGGGTGAGCAAGGATGATCAACCATCAACTCAGTCACCTGTTTCAGGGGAATTATCTAGAAAAAGACCTGTTCCTCTAGATAATGAACAATTGGCCAATGGTCATGATACCATCTCTAAGCGAATTCGTTCTGGTTCTGATTCTCACTCTACTTTACCAGCTCAAATAAATGATTCTAGGCAGGATCTTAGCTCTGTTAATGGAGTATCAGCTAATGTTCCTGTGCTGGATAGCGAACTAACTGCTGTGGAGCAAATGATTGCTGTAATTGGTGCTTTACTTGCTGAAGGAGAGAGAGGTGCTGAATCTCTTGAAATTCTCATTTCAAAGATTCATCCTGATCTGTTGGCTGATATTGTCATAACTAATATGAAGCACTTACCAAAGACCCCCCCACCACTAGCAAGGATTGCAAATTTACCAGTAACACGTCAATTAAGCTCCCAAGTCAGTCAATCTCAGGTTATAGCAGCTTCTGTTCCAATAAATTCTGTCCAATCCTTGTCTGGTACTGCCCAAGCTTCATTCCCTTCACCTACGCCCACTGTCACTGTTACTGTTACCACTTCATTGCCATCTGACACCTCTAACTTCAGTAACCAGCCTGCTGATTCTAAACGTGATCCACGACGGGATCCCCGTCGCCTGGATCCCCGGCGTGTAGTGGTAACTCCTGGAGGAGCAACTGTATCAATTGCAGATGATACTGGGGCCACAAAAGAGTTTGATGAACCTGTGTCTTCCATTAAGCCTGTTTCACTTCCTGTCATGACTGCTGATGACAATACTCTGTCAGATCTGACGGTCAAAATAAAAAATGATGATATTATCTCTGAAGGTTCCCCAGTTTCGGGACCCGATCAAGTAACTCCGAAAACAGAGGTTCTGGAAATGCCTGGAGATATTCATCAGATTACAGAAGCAGATACTTCCTTGGATCCCTCACTCTCTTCTACTGATTTAAGAGATGAGGATCTGAGTAAAGCGAAGCTGTCAGAAGATACTGAAACAATTGGGACAGATTCATCAATTTTCGAGATTGATCAGTCTTCTATTGATGTTCAAGTTGAATCTACATTGGAAGACACCTGTCTGGAGTTACCACAGCTTCCGCCTTATATTGAACTATCCGAAGAACAGGGAAGTAAGGTGAAAAACATGGCTGTTAGGCGTATAATTGATTCATACAAACATTTGCATGGGACAGATTGTCAGCAGTTTTGCATGCCACTACTTGCTCGACTAGTTGCACAGATTGATGACAACGATGAGTTTATTACGATGCTGCAAAAACATATTTTAGAAGACCACTGGCGAAAGGGGCATGAACTTGTACTGCATGTTTTGTATCATCTGCACTCCCTCATGATATTGGATTCAGTTGGAAATGCTTCATCTTCTGCTGTTTTATATGAAAAATTTCTCCTGGGTCTGGCCAAGACGTTGTTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTTCCACTTTTGCCTGAGTCATCCTTGAAGATTTTAAACGACCTCTGCTATTCTGATGTTATTGGTCATGATGGAAAAATCATTCGTGACATTGAACGTGTGACTCAAGGCCTTGGTGCTATCTGGAGTTTAATTTTGGGGCGTCCACAAAATCGTCAAGCCTGCTTAGGAATAGCATTGAAGTGTGCTGTTCACCCACAGGATGAGATTCGAGCAAAAGCTATTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAGTTACATATCAGGAGATGTTGAAAAGTTTGCAACAAAAATGCTGCTTTCTGCTGTAGACCATGAAGTTTCAGATACAGGTCTTTTGCAATCTGGACATACTGAACAAATAGCTGAGGCAGAGGTTGAAAGTCATGAAATAAGTTGTACTTCACAGGTTTCAGAGTCCACAATTTCTGAAAATGACACTGCTATATTTGCTAAACCATCGATTCAAAGTGTTCCATCTATATTGTTTTCTGAAGCTCAACGCCTCATTTCTTTGTTTTTTGCTTTATGCACAAAGAAACCCAGTCTTCTTCAGATAGTATTTAATGTGTATGGACAAGCCCCGAAAATTGTAAAACAGGCTTTTCATCGCCACGTTCCTGTTGTTGTGAGGGCGTTAGGGCAATCTTATTCTGAATTGCTCCATATCATATCTGATCCACCACAAGGAAGTGAAAATCTTCTGACACTGGTACTGCAAATATTGACTCAAGACACGACGCCATCTTCTGATTTGATATCTACCGTTAAACATTTGTATGAAACTAAATTTAGGGATGTTACGATTCTTGTCCCGTTACTGTCTTCGCTTTCCAAACAAGAGGTTTTACCAATATTCCCTCGGCTTGTTGATCTTCCATTGGAAAAGTTTCAAAGAGCACTTGCTCACATACTACAGGGTTCAGCTCATACGGGTCCAGCTTTAACACCTGTAGAAGTGTTGGTTGCAATCCATGGAATTGTTCCTGAGAAGGATGGCCTTGCACTTAAGAAGATAACAGATGCTTGCTCAGCTTGTTTTGAGCAACGTACAGTGTTCACGCAACAGGTTCTGGCAAAGGCATTGAACCAGATGGTTGATCAAACTCCGCTGCCTCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCAATGGTTGATTTTGTTATGGAGATACTCTCAAAACTTGTGTCTAGACAGGTGTGGCGTATGCCAAAACTTTGGGTTGGATTCTTAAAATGTGTATATCAGACACAGCCTCGTTCTTTTCATGTATTATTGCAGTTGCCACCTCAACAGCTGGAAAGTGCACTCAACAGGCATGCTAATCTCAGAGGTCCCCTTGCTTCTTATGCCAGCCAACCAACTGTAAAATCATCACTTAGTAGATCAACTTTAGCAGTTCTCGGTCTTGCGAATGAAACTCATGAGCAACATTTGTCATCTTCGTTACACTCTTCTGACACAAGTTCTTCAGTTCACGGAGCAACTCTGACGTGA
>Glyma04g09485.1 sequence type=predicted peptide gene model=Glyma04g09485 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPTRDQVLSLLAAANNHGDLAVKTSSLKQAKDLLLSIDPSLAADLFPYLIELQSSPESLVRKLLIQIIEEIGFKAVEHSPTMISLLLTFLRDGDAIVVKQSIVSGTNIFCSVFEELIVQFQQYGKVERWLEDIWMWMLRFKDAVFGIAVEPASVGIKLLALKFLETFVLLFSSDIGDTEKLATKGIRQAVNVEWLVGGHPHPVLDPVVLISDANRTIGILLNLLLSVGSLPGCLTITVVNCLAAIARKRPQHYDTILSALLDFDPDFQRVKGCHVTSIQYSFRTAFLGFLRCTYSPILESRERLIRSLRAMNAGDAADQVIRQVDKMIKNGDRSTRDARVSKDDQPSTQSPVSGELSRKRPVPLDNEQLANGHDTISKRIRSGSDSHSTLPAQINDSRQDLSSVNGVSANVPVLDSELTAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLARIANLPVTRQLSSQVSQSQVIAASVPINSVQSLSGTAQASFPSPTPTVTVTVTTSLPSDTSNFSNQPADSKRDPRRDPRRLDPRRVVVTPGGATVSIADDTGATKEFDEPVSSIKPVSLPVMTADDNTLSDLTVKIKNDDIISEGSPVSGPDQVTPKTEVLEMPGDIHQITEADTSLDPSLSSTDLRDEDLSKAKLSEDTETIGTDSSIFEIDQSSIDVQVESTLEDTCLELPQLPPYIELSEEQGSKVKNMAVRRIIDSYKHLHGTDCQQFCMPLLARLVAQIDDNDEFITMLQKHILEDHWRKGHELVLHVLYHLHSLMILDSVGNASSSAVLYEKFLLGLAKTLLDSFPASDKSFSRLLGEVPLLPESSLKILNDLCYSDVIGHDGKIIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAVHPQDEIRAKAIRLVTNKLFQLSYISGDVEKFATKMLLSAVDHEVSDTGLLQSGHTEQIAEAEVESHEISCTSQVSESTISENDTAIFAKPSIQSVPSILFSEAQRLISLFFALCTKKPSLLQIVFNVYGQAPKIVKQAFHRHVPVVVRALGQSYSELLHIISDPPQGSENLLTLVLQILTQDTTPSSDLISTVKHLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPAMVDFVMEILSKLVSRQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTVKSSLSRSTLAVLGLANETHEQHLSSSLHSSDTSSSVHGATLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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