Glyma04g09400 - SoyBase

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Report for Sequence Feature Glyma04g09400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7632108
stop:	7633393
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09960	AT	Annotation by Michelle Graham. TAIR10: sucrose transporter 4 \| chr1:3244258-3246718 FORWARD LENGTH=510	SoyBase	E_val: 2.00E-116	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
PTHR19432	Panther	SUCROSE TRANSPORT PROTEIN	JGI		ISS
PTHR19432:SF2	Panther	PROSTEIN PROTEIN	JGI		ISS
UniRef100_I1JV06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV06_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_J7FDW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SUT4-2 n=1 Tax=Medicago truncatula RepID=J7FDW2_MEDTR	SoyBase	E_val: 4.00E-152	ISS

Expression Patterns of Glyma04g09400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma04g09400 not represented in the dataset	Glyma04g09400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g09400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g088900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09400

Limit To All Plant Sequences

>Glyma04g09400.2   sequence type=CDS   gene model=Glyma04g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGGCAAGGATCACCGAAGGACACGTGTTGCAAATGCTTATTACTCCCTGTTTATGGCAATTGGTAATATTCTTGGATATACAACTGGATCATACAGTGGTTGGTACAAGGTCTTTGCTTTGGCACTTACCCCTGCATGCAATATTAGTTGTGCAAATCTCAAGTCTGCTTTATTTCTCGACATTATTTTCATTGCTGTCACCACATATATAAGCATTGTGGCAGCTAAAGAAGTGCCTCTAAGTTCAAGTGGAGCACTCCCTGTTGAAGAAGCAGCAGCAGGGGAATCAGGTACTGCAGGAGAAGCTTTCCTGTGGCAGCTATTTGGGACATTCAGATATTTTTCGACCCCTATATGGACAATACTGACTGTTAATGCTCTAAGATGGATTGGGTGGTTTCCATTTCTCCTATTTGATACTGATTGGATGGGCCGAGAGATTTATGGTGGTGAGCCAAATGAAGGCCCTAATCATGATACTGGAGTTAGAATGGGGGCACTTGGCTTACTGCTTAATTCAGTTGTTCTTGGAGTAACGTCAGTACTCTTGGAGAGGCTATGCAGGAAGCGGGGACCTGGGTTTCTGTGGGGAATTTCAAATATCCTAATGGCTGTCTGCTTTATTTCAATGCTTGTTGTAACCTATGTGGCAAATAACATTGGCTATGTAGGCAAAGATCTACCACCAACTGGCATTGTGATAGCTTCATTGATAATCTTTATCGTTCTTGGATTTCCACATGCAATCACTTACAGCTTTCCATATGCCTTGATTTCCACACACATTCAGTCATTGGGGCTTGGTCATTGTGGGCAGGATTGA

Predicted protein sequences of Glyma04g09400

Limit To All Plant Sequences

>Glyma04g09400.2   sequence type=predicted peptide   gene model=Glyma04g09400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGKDHRRTRVANAYYSLFMAIGNILGYTTGSYSGWYKVFALALTPACNISCANLKSALFLDIIFIAVTTYISIVAAKEVPLSSSGALPVEEAAAGESGTAGEAFLWQLFGTFRYFSTPIWTILTVNALRWIGWFPFLLFDTDWMGREIYGGEPNEGPNHDTGVRMGALGLLLNSVVLGVTSVLLERLCRKRGPGFLWGISNILMAVCFISMLVVTYVANNIGYVGKDLPPTGIVIASLIIFIVLGFPHAITYSFPYALISTHIQSLGLGHCGQD*

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