Glyma04g09370 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma04g09370

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7556700
stop:	7560744
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49660	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase family protein \| chr5:20161401-20164534 REVERSE LENGTH=966	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010051	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF681	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_B9R6R5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R6R5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A8BD	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A8BD related cluster n=1 Tax=unknown RepID=UPI000233A8BD	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09370

Paralog	Evidence	Comments
Glyma06g09510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g088700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09370

Limit To All Plant Sequences

>Glyma04g09370.2   sequence type=CDS   gene model=Glyma04g09370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCACCCCTTCATCACCCTCTTCGCCACCATCATACTCATCATAGTTTCCCTCTCACAGGCCATCACCACCAAGAATAATAATCAGTCACAGTTTTTCTCTCTGATGAAGGACTTGTCTCTCTCGGGGAAATACCCCACGAATTGGGACGCTGCAGGGAAATTAGTACCCGTGTGCGGCTTCACCGGAGTCACCTGCAACACCAAAGGTGACGTTATCAGCCTCGACCTCTCAGATCGGTCATCACTTTCTGGAAATTTCCCACCAGATATATGCTCTTACCTTCCACAATTACGTGTTCTCCGCCTCGGCCACACTAGGTTCAAGTTCCCCATAGACACCATCCTCAACTGTTCCCACCTGGAAGAGCTTAACATGAACCACATGTCCCTCACCGGCACGCTCCCTGATTTCTCTTCCTTGAAAAAATCCCTCAGGGTTCTCGACTTGTCCTACAACAGCTTCACTGGCCAGTTCCCCATGTCGGTCTTCAACCTCACCAACCTCGAGGAGCTCAACTTCAACGAAAACGGAGGCTTCAATCTGTGGCAGTTACCTGCGGATATCGACAGGTTGAAAAAACTCAAGGTCATGGTGCTCACAACGTGCATGGTGCATGGCCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCACCGATCTTGAGCTGAGTGGGAATTTCCTCACGGGACAAATTCCCAAAGAGCTTGGCCAGCTGAAGAATTTGCAACAGCTTGAGCTTTACTATAACTACCACCTCGTTGGGAACATACCTGAGGAGTTGGGGAACCTGACGGAGCTCGTGGATTTGGATATGTCGGTGAACAAGTTCACCGGGAGCATCCCCGCGTCGGTGTGTAGGCTTCCGAAGCTTCAAGTGTTGCAGCTCTACAACAACAGCCTCACCGGAGAAATCCCAGGTGCGATTGAAAACTCAACAGCTTTGAGAATGTTGTCTCTCTACGACAACTTCCTCGTAGGGCATGTTCCCAGGAAACTGGGACAGTTCTCCGGGATGGTGGTTCTTGATTTGTCGGAGAACAAGTTTTCTGGACCGTTGCCAACCGAGGTTTGCAAGGGAGGTACGCTTGGGTACTTTCTCGTTCTGGATAACATGTTTTCTGGTGAGATACCACAGAGTTATGCCAACTGCATGATGCTGTTGAGGTTTAGAGTGAGCAACAACCGTTTGGAGGGGTCCATTCCCGCGGGACTCCTTGCTTTGCCACACGTTTCAATCATTGATTTGAGTAACAACAACCTGACCGGTCCGATTCCTGAGATTAACGGAAATTCTAGAAACTTGTCTGAACTGTTCCTTCAGAGGAACAAGATTTCAGGTGTCATAAACCCCACCATATCTAGAGCCATTAATTTGGTCAAGATTGATTTCAGCTATAACCTTCTGTCTGGTCCAATCCCTTCCGAAATTGGCAACCTGAGAAAGCTTAATTTGCTTATGCTGCAAGGAAACAAGCTGAATTCCTCCATCCCCGGTTCACTTTCTTCATTGGAGTCTCTCAACCTTCTTGATCTCTCCAACAATCTTTTAACCGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTACCAAACTCTATTAACTTCTCACACAACCTTCTTTCGGGTCCAATTCCTCCCAAACTTATAAAAGGGGGTTTGGTGGAAAGCTTTGCTGGGAATCCTGGGTTGTGTGTGTTACCGGTGTATGCTAATTCATCGGATCATAAGTTCCCTATGTGTGCAAGTGCCTACTACAAGAGTAAGAGGATAAACACCATCTGGATAGCTGGGGTGTCTGTGGTTTTGATCTTCATTGGCTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACACTGCTGCAGTAGAACATGAGGACACACTGTCTTCTTCGTTCTTCTCTTATGATGTCAAGAGCTTCCACAAGATATCTTTCGACCAAAGGGAGATAGTTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACTGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTTGCGGTGAAGAGGCTGTGGAGTCACGCGTCCAAGGATTCGGCTCCGGAGGATCGGTTATTTGTAGACAAGGCATTGAAAGCAGAGGTGGAGACCCTGGGAAGCATAAGACACAAGAACATTGTGAAACTGTACTGCTGCTTCTCCAGTTATGACTGCAGCCTTTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATTCACTGCACAAAGGTTGGATCCTCTTGGATTGGCCTACTCGTTATAGAATAGCACTGGGGATTGCGCAGGGTTTGGCATACCTCCACCATGATTTGCTTCTTCCTATTATCCACCGAGATATCAAGTCAACTAATATCCTGTTGGATGTGGATAACCAGCCCAAGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGGAAAGGATTCCACTACAACTGTTATTGCAGGAACATATGGTTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGATGTCTACAGTTATGGGGTGATTTTGATGGAACTGTTAACTGGGAAGAAGCCCGTTGAGGCAGAATTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTCGAAGGCAAGGAAGGGGCTAGACCAAGTGAGGTATTAGATCCAAAGTTGTCATGTTCATTTAAGGAAGACATGATCAAAGTGTTGCGGATTGCTATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAGGAGGTTGTTCAGCTTCTGATTGAGGCAGAGCCACGCGGTTCCGATTCTTGCAAGTTGTCAACCAATGATGTATCAAATGTCACCGTAATAAAGAAACCATATGAATTATAA

Predicted protein sequences of Glyma04g09370

Limit To All Plant Sequences

>Glyma04g09370.2   sequence type=predicted peptide   gene model=Glyma04g09370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHPFITLFATIILIIVSLSQAITTKNNNQSQFFSLMKDLSLSGKYPTNWDAAGKLVPVCGFTGVTCNTKGDVISLDLSDRSSLSGNFPPDICSYLPQLRVLRLGHTRFKFPIDTILNCSHLEELNMNHMSLTGTLPDFSSLKKSLRVLDLSYNSFTGQFPMSVFNLTNLEELNFNENGGFNLWQLPADIDRLKKLKVMVLTTCMVHGQIPASIGNITSLTDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCRLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLVGHVPRKLGQFSGMVVLDLSENKFSGPLPTEVCKGGTLGYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSIPAGLLALPHVSIIDLSNNNLTGPIPEINGNSRNLSELFLQRNKISGVINPTISRAINLVKIDFSYNLLSGPIPSEIGNLRKLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNLLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDHKFPMCASAYYKSKRINTIWIAGVSVVLIFIGSALFLKRRCSKDTAAVEHEDTLSSSFFSYDVKSFHKISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSHASKDSAPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFSSYDCSLLVYEYMPNGNLWDSLHKGWILLDWPTRYRIALGIAQGLAYLHHDLLLPIIHRDIKSTNILLDVDNQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSYGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVLDPKLSCSFKEDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKLSTNDVSNVTVIKKPYEL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain