SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49650 | AT | Annotation by Michelle Graham. TAIR10: xylulose kinase-2 | chr5:20152898-20155574 FORWARD LENGTH=558 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005997 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylulose metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004856 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xylulokinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG2531 | KOG | Sugar (pentulose and hexulose) kinases | JGI | ISS | |
| PTHR10196 | Panther | XYLULOSE KINASE | JGI | ISS | |
| PTHR10196:SF10 | Panther | XYLULOSE KINASE | JGI | ISS | |
| PF00370 | PFAM | FGGY family of carbohydrate kinases, N-terminal domain | JGI | ISS | |
| PF02782 | PFAM | FGGY family of carbohydrate kinases, C-terminal domain | JGI | ISS | |
| UniRef100_G7J420 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Xylulose kinase n=1 Tax=Medicago truncatula RepID=G7J420_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JV02 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JV02_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma04g09340 not represented in the dataset |
Glyma04g09340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma06g09490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.04g088400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma04g09340.1 sequence type=CDS gene model=Glyma04g09340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGAATTATCTCTTCCTCAGGATTCTTACTTTCTCGGATTCGACAGTTCCACCCAGTCGTTAAAGGCCACTGTGTTGGACTCCAACCTCAACATCGTAGCCTCAGAGCTTGTTCATTTCGATTCCGACTTGCCCCATTACAAAACCAAAGATGGGGTGCACAGAGACCCTTCTGGCAATGGCAGAATCGTTTCACCCACTTTGATGTGGGTGGAAGCTCTTGACCTAATTCTTCAAAAGCTTTCAAAATCAAATTTTGATTTTGCCAAGGTTGCTGCTGTTTCTGGCAGTGGCCAACAGCATGGTAGTGTGTATTGGAAGAGTGGCAGTTCTCAGATATTGTCATCATTGGATCCTAAGAAGCCATTGTTGGATCAGCTTGAAAATGCTTTTTCCATTAAGGAATCCCCAATTTGGATGGACAGTAGCACCACTGCTGAGTGTAGGGCTATAGAGAAGGCTTTTGGGGGAGCCTTGGAGTTGGCTCGTGTCACGGGATCACGTGCATATGAGAGGTTTACTGGTCCCCAGATCAAGAAGATATTTGATACTCAGCCAGAAATTTATGACGGCACTGAAAGGATATCGCTTGTTAGCTCCTTCATGGCGTCTCTTTGCGTTGGCGCTTATGCTTCCATTGATCATTCTGATGGTGGAGGCATGAATTTAATGGATTTAAAGGAAAAGGCCTGGTCTAAAGTAGCACTTGAGGCAACTGCCCCTGGTTTGGAGTCAAAACTTGGAGAGTTAGCCCCTGCCTATGCTGTTGCTGGAAATATTGCTCCATATTTTGTAGAGAGGTATAACTTTAACAAGGATTGCTTAGTTGTTCAATGGTCAGGAGACAATCCGAATAGTGTGGCAGGTTTGACCCTAAATATTCCAGGAGATCTCGCCATCAGCCTTGGCACTAGTGATACTGTATTTATGATCACTAAAGATCCTAATCCAGGATTAGAGGGACATGTCTTCCCCAATCCAGTTGATGCAGAAGGTTACATGGTAATGCTGGTATACAAAAATGGATCCCTTACCCGAGAAGATGTGCGCAACTGTTATGCAAACAAATCTTGGGATGTTTTCAATAAATTTTTGCAGCAAACACAGCCTTTAAATGGTGGAAAGTTAGGTTTCTACTACAAGGAGCATGAAATTCTACCTCCTCTTCCAGTTGGTTTCCACCGCTATATCATAGAAAATTTCTCAGACACACCAGATGGACTGAAGGAACAGGAAATGGAGGAGTTTGATCCTCCATCTGAGGTCCGGGCATTAATTGAGGGTCAATTTCTCTCAATGCGGGCTCATGCTGAAAGATTTGGAATGCCTTCTCCCCCAAAGAGAATTATAGCTACTGGTGGAGCATCAGCGAATCATTGCATCCTTAGTGCAATAGCTTCAATTTTTGGCTGTGATGTCTATACAGTTCAAAGACCTGATTCAGCTTCACTTGGAGCTGCATTGAGAGCTGCTCATGGCTGGCTCTGCAACAAGAAGGGCGGGTTTTTACCGATATCTGATATGTACGTGGACAAATTGGAGAAAACGTCCCTGAGCTGCAAACTTTCAGTGAGTGCTGGAGATCATGAATTGGTTTCCAAGTATGCCACCCTCATGAAAAAGAGAATTGAAATAGAGAATCGGCTCGTTCAAAAGCTTGGACGCTTTTGA
>Glyma04g09340.1 sequence type=predicted peptide gene model=Glyma04g09340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAELSLPQDSYFLGFDSSTQSLKATVLDSNLNIVASELVHFDSDLPHYKTKDGVHRDPSGNGRIVSPTLMWVEALDLILQKLSKSNFDFAKVAAVSGSGQQHGSVYWKSGSSQILSSLDPKKPLLDQLENAFSIKESPIWMDSSTTAECRAIEKAFGGALELARVTGSRAYERFTGPQIKKIFDTQPEIYDGTERISLVSSFMASLCVGAYASIDHSDGGGMNLMDLKEKAWSKVALEATAPGLESKLGELAPAYAVAGNIAPYFVERYNFNKDCLVVQWSGDNPNSVAGLTLNIPGDLAISLGTSDTVFMITKDPNPGLEGHVFPNPVDAEGYMVMLVYKNGSLTREDVRNCYANKSWDVFNKFLQQTQPLNGGKLGFYYKEHEILPPLPVGFHRYIIENFSDTPDGLKEQEMEEFDPPSEVRALIEGQFLSMRAHAERFGMPSPPKRIIATGGASANHCILSAIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNKKGGFLPISDMYVDKLEKTSLSCKLSVSAGDHELVSKYATLMKKRIEIENRLVQKLGRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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