Glyma04g09310 - SoyBase

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Report for Sequence Feature Glyma04g09310

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7490331
stop:	7496067
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49630	AT	Annotation by Michelle Graham. TAIR10: amino acid permease 6 \| chr5:20142681-20146441 REVERSE LENGTH=481	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0015810	GO-bp	Annotation by Michelle Graham. GO Biological Process: aspartate transport	SoyBase	N/A	ISS
GO:0015827	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015172	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acidic amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: neutral amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_C6THQ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6THQ4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7J416	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid permease n=1 Tax=Medicago truncatula RepID=G7J416_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09310

Paralog	Evidence	Comments
Glyma06g09470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g088200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09310

Limit To All Plant Sequences

>Glyma04g09310.1   sequence type=CDS   gene model=Glyma04g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCTGATCAGTTTCAGAAGAACAGCATGTTCGTAGAAACCCCTGAAGATGGTGGCAAAAACTTCGACGATGATGGACGAGTCAGAAGAACGGGTACATGGATAACTGCGAGTGCCCATATCATAACGGCAGTGATAGGGTCAGGAGTGTTGTCACTTGCATGGGCAATTGCACAAATGGGTTGGGTGGCTGGCCCTGCCGTTCTCTTTGCCTTCTCTTTCATCACTTACTTCACTTCCACTCTTCTTGCCGACTGTTATCGTTCACCTGATCCTGTTCATGGCAAGCGAAACTACACCTATTCCGATGTTGTCAGATCCGTCTTAGGAGGGAGGAAATTTCAGCTGTGTGGATTAGCTCAGTACATAAATCTTGTCGGTGTAACTATCGGTTACACGATAACGGCTTCAATTAGTATGGTGGCGGTGAAGAGGTCGAATTGTTTTCACAAACATGGTCATCATGTTAAGTGCTATACGTCAAACAACCCTTTCATGATCCTCTTTGCCTGCATTCAAATCGTGCTTAGCCAGATACCAAATTTCCATAAGCTCTGGTGGCTCTCCATTGTTGCAGCAGTTATGTCTTTTGCTTATTCTTCCATTGGCCTCGGGCTCTCAGTAGCTAAAGTGGCAGGTGGTGGAGAGCCTGTACGGACAACCTTAACGGGGGTGCAAGTTGGGGTAGACGTTACAGGATCCGAGAAGGTCTGGAGGACGTTTCAAGCTATTGGTGACATTGCCTTCGCTTATGCTTATTCTAACGTGCTCATCGAGATACAGGATACCCTGAAATCGAGCCCTCCAGAGAACAAGGTCATGAAAAGAGCAAGTTTGATTGGCATCTTGACTACAACCTTGTTCTATGTGCTATGTGGCTGCCTAGGTTATGCAGCATTTGGAAACGATGCACCAGGAAATTTCCTCACAGGGTTCGGCTTCTACGAGCCCTTTTGGCTCATAGACTTTGCTAACATCTGCATAGCCGTGCACTTGGTTGGAGCATATCAGGTCTTCTGTCAGCCCATATTTGGGTTCGTAGAGAACTGGGGTAAGGAAAGGTGGCCAAATAGCCAATTTGTAAATGGAGAACACGCTTTGAACTTTCCACTATGTGGAACCTTCCCTGTGAACTTCTTCAGGGTGGTGTGGAGAACAACATATGTCATCATCACTGCTTTGATAGCTATGATGTTTCCATTCTTCAATGACTTCCTAGGCCTGATTGGTTCACTGTCCTTTTGGCCATTAACCGTTTACTTCCCCATAGAAATGTACATTAAGCAGTCAAAGATGCAAAGGTTTTCCTTCACGTGGACATGGCTCAAGATACTGAGCTGGGCTTGCTTGATCGTTTCTATTATCTCAGCTGCTGGTTCCATCCAAGGCCTCGCTCAAGATCTCAAGAAATATCAGCCCTTCAAAGCCCAGCAATAA

Predicted protein sequences of Glyma04g09310

Limit To All Plant Sequences

>Glyma04g09310.1   sequence type=predicted peptide   gene model=Glyma04g09310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSDQFQKNSMFVETPEDGGKNFDDDGRVRRTGTWITASAHIITAVIGSGVLSLAWAIAQMGWVAGPAVLFAFSFITYFTSTLLADCYRSPDPVHGKRNYTYSDVVRSVLGGRKFQLCGLAQYINLVGVTIGYTITASISMVAVKRSNCFHKHGHHVKCYTSNNPFMILFACIQIVLSQIPNFHKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGEPVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVMKRASLIGILTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFGFVENWGKERWPNSQFVNGEHALNFPLCGTFPVNFFRVVWRTTYVIITALIAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWLKILSWACLIVSIISAAGSIQGLAQDLKKYQPFKAQQ*

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