Glyma04g09280 - SoyBase

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Report for Sequence Feature Glyma04g09280

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7452397
stop:	7453380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25910	AT	Annotation by Michelle Graham. TAIR10: 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein \| chr2:11049379-11051997 REVERSE LENGTH=341	SoyBase	E_val: 9.00E-118	ISS
GO:0006139	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008408	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity	SoyBase	N/A	ISS
PTHR12124	Panther	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	JGI		ISS
PTHR12124:SF4	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
PF01612	PFAM	3'-5' exonuclease	JGI		ISS
UniRef100_B9RRW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 3'-5' exonuclease, putative n=1 Tax=Ricinus communis RepID=B9RRW2_RICCO	SoyBase	E_val: 7.00E-118	ISS
UniRef100_UPI0002339DD7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DD7 related cluster n=1 Tax=unknown RepID=UPI0002339DD7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma04g09280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g087900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09280

Limit To All Plant Sequences

>Glyma04g09280.2   sequence type=CDS   gene model=Glyma04g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTTCTTCTTCTTCTTCCTCCTCTCTTCCTAATCTTCATCCATCACATCGTGCTGAAGTACGCATCGTGACGAAGGCGTCTGAACTCCCCGCTGCATTTCTTGCACCCTCCCCGTCGTCGAAGCTGGTGATCGGTTTCGACAACGAGGGCGTGAAACTGGGCCGCGATGGCACTCTCTGCGTGATGCAGCTGGCGTTCGACGACGCCATATACATCGTGGACACCATCGAAGGCGAAGAGAATCTCGTAATGAAAGCTTGCAAGGCGGCGCTGGAGTCCGAACACGTGACAAAGGTGATCCACGACTGCAAACGCGACAGCGAGGCCTTGTACTTCCAGTTCGGCATCAGGCTAAACAACGTGGTGGACACGCAGATCGCGTACTCGCTCATAGAGTCGCAAGAGCAAGGAAAGAAGGTAAACGACTACATCTCCTTCGTCGACCTTCTCGCAGATCCGCGTTACTGCGGCGTAGCGTATCCGGAGAAGGAAGAGGTTCGCTTAATCCTGAAAAGGAACACCGAGTTTTGGAGAGAGAGACCGTTGACCGAGTATAAGTTGAATGCTGCTGCTGCTGATGTTCGTTATCTTATACACATTTACCACAAGATGATGGAGAAGCTGAGTGAGAAATCTTTATGGTATCTTGCGGTTCGTGGTGGATTGTATTGCCGGTGTTTCTGCGGGAACGCTGAGAATTGGCCACCTCTGGCTCCGGAAGCGCTGAAAGATGAGAACGGAAAGGGACCGGAGGAAGAAAGGATTTGGGTGTTGGATATTCCGGCGGGAGGGTGGGCGAGAGAAGTTATTGGGGACGGAGGGATAACAATTAGGAATCTTAGGAAGGCCAGCGATGCAGAAATCCACATTGTTGAAAGGCCACCGGATGACAAGGCCTTCATCATCGGAACAGAGAAGGAGGCCAAGAAAGCCATGGCTATGGTACGTGGTGTCTGGGAACATTCCGAAATCAGTTAG

Predicted protein sequences of Glyma04g09280

Limit To All Plant Sequences

>Glyma04g09280.2   sequence type=predicted peptide   gene model=Glyma04g09280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSSSSSSSLPNLHPSHRAEVRIVTKASELPAAFLAPSPSSKLVIGFDNEGVKLGRDGTLCVMQLAFDDAIYIVDTIEGEENLVMKACKAALESEHVTKVIHDCKRDSEALYFQFGIRLNNVVDTQIAYSLIESQEQGKKVNDYISFVDLLADPRYCGVAYPEKEEVRLILKRNTEFWRERPLTEYKLNAAAADVRYLIHIYHKMMEKLSEKSLWYLAVRGGLYCRCFCGNAENWPPLAPEALKDENGKGPEEERIWVLDIPAGGWAREVIGDGGITIRNLRKASDAEIHIVERPPDDKAFIIGTEKEAKKAMAMVRGVWEHSEIS*

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