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Report for Sequence Feature Glyma04g09260

Feature Type:gene_model
Chromosome:Gm04
Start:7433225
stop:7436910
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g09260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10030AT Annotation by Michelle Graham. TAIR10: homolog of yeast ergosterol28 | chr1:3273972-3275631 FORWARD LENGTH=129 SoyBaseE_val: 7.00E-73ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019745GO-bp Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
KOG3455 KOG Predicted membrane protein JGI ISS
PTHR15451Panther FAMILY NOT NAMED JGI ISS
PTHR15451:SF9Panther SUBFAMILY NOT NAMED JGI ISS
PF03694PFAM Erg28 like protein JGI ISS
UniRef100_C6SWX3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWX3_SOYBN SoyBaseE_val: 3.00E-87ISS
UniRef100_G7J410UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ergosterol biosynthetic protein n=1 Tax=Medicago truncatula RepID=G7J410_MEDTR SoyBaseE_val: 1.00E-79ISS

Expression Patterns of Glyma04g09260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09260
ParalogEvidenceComments
Glyma06g09400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g087700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g09260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g09260
>Glyma04g09260.1   sequence type=CDS   gene model=Glyma04g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGCATTGGGATGGTGGCTGATAGCGGTAGGCACGCTTCGATTGGCCTCCGTGTGGTTCGGTTTCTTCGACATTTGGGCTCTTCGACTCGCCGTCTTCTCCAACACTACAATGACTGAAGTTCATGGGCGCACATTTGGAACTTGGACACTGTTGACCTGCACCCTTTGCTATATCTGCGCATTCAACCTTGAAAATAAGCCTCTCTACCTGGCTACTTTCTTGTCATTCATCTATGCATTGGGTCATTTCTTGACCGAATATCTAATTTATCATACAATGGAGATTAAGAATCTGACTACTGTTGGCATATTTGCAGGAACATCGATAATATGGATGCTATTGCAATGGAATGCACACTCGAAAGTCCACTTGAAGCACTCTTAG
Predicted protein sequences of Glyma04g09260
>Glyma04g09260.1   sequence type=predicted peptide   gene model=Glyma04g09260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKALGWWLIAVGTLRLASVWFGFFDIWALRLAVFSNTTMTEVHGRTFGTWTLLTCTLCYICAFNLENKPLYLATFLSFIYALGHFLTEYLIYHTMEIKNLTTVGIFAGTSIIWMLLQWNAHSKVHLKHS*






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