Glyma04g09230 - SoyBase

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Report for Sequence Feature Glyma04g09230

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7380933
stop:	7395185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11700	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 8203 Blast hits to 3102 proteins in 389 species: Archae - 3; Bacteria - 5624; Metazoa - 852; Fungi - 139; Plants - 704; Viruses - 77; Other Eukaryotes - 804 (source: NCBI BLink). \| chr5:3762961-3771123 REVERSE LENGTH=1476	SoyBase	E_val: 0	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
UniRef100_D7M4B5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M4B5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339DD5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DD5 related cluster n=1 Tax=unknown RepID=UPI0002339DD5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09230

Paralog	Evidence	Comments
Glyma06g09360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g087300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09230

Limit To All Plant Sequences

>Glyma04g09230.1   sequence type=CDS   gene model=Glyma04g09230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGATTTCGTTTCCGGCGCCTCCGATTCCTCGCCATCTTCGTCGTCGTCGTGGTGTTCGCGAGTGACGAATTGGAGTCAGAGCGCGAGCTCTCGGTGACCGATTTGGATTGGAACCTTTTCCACCAGGACTACTCGCCGCCGGCTCCGCCGCCACCGCCGCCTCATCCGCCGTCGGTATCGTGCGTGGACGATCTAGGCGGGGTGGGGACTCTGGACACGACGTGCAAGATCGTGAACGACGTGAACCTCACCCGTGACGTGTACATAGCAGGGAAGGGCAATTTTAACATCCTCCCTGGGGTGAGGTTCCTCTGCGAGATTCCCGGGTGCATGGTAACGGTTAACGTCACTGGTAATTTTAGTTTAGGTAGCAACTCGTCGATTGTGACTGGGGCCTTTGAGTTCGAGTCGGAGAATGCTGTTTTTGGGAACGAGTCGGTGGTGAACACGACGGGGATGGCGGGGGATCCTCCGCCGCAGACGAGTGGGACACCGCAGGGGGTTGAGGGAGGTGGCGGAGGGCACGGCGGGAGGGGTGCTAGCTGTCTCGTCGACACGACGAAGCTCCCGGAGGATGTTTGGGGAGGGGATGCATATTCCTGGGCGTCGCTGCAGAACCCTTACAGTTTTGGGAGCCGTGGAGGGTCGACAAGCAAAGAGAGTGACTATGGGGGGTTGGGAGGGGGGCTTGTGAGGATGGTTGTTCATCAAATTGTTGAGATGAATGCAACTGTTTTGGCTGATGGGGGTGATGGAGGGACCAAAGGTGGAGGTGGCTCTGGAGGCAGCATCTACATCAAAGCTTATAGAATGACTGGCAATGGGATTATAAGTGCTTGTGGAGGTAATGGTTTTGCTGGCGGTGGAGGTGGCAGGGTTTCAGTTGATGTTTTCAGTAGGCATGATGAGCCCAAAATATATGTGCATGGTGGTAAGAGCCTTGGCTGTCCTGAAAATGCAGGTGCTGCTGGGACTCTTTATGATGCAGTCCCTCGAAGCCTTATAGTTGATAACTTTAACATGACAACTGATACAGAGACACTTCTATTGGAGTTTCCAAATCAACCCCTTTGGACTAATGTTTATGTTCGAAATAAGGCTAGGGCCACAGTTCCATTGCTTTGGAGTCGTGTACAGGTACAAGGACAGATAAGTATCTTGCAGGGTGGGGTGTTGAGCTTTGGGCTACGACACTATGCTACATCAGAGTTTGAGTTATTGGCTGAAGAATTGTTGATGAGTGATTCTGTGATGAAGGTATATGGTGCTCTACGTATGTCTGTAAAAATGTTCTTGATGTGGAACTCAAAAATGCTCATAGATGGCGGGGAAGATATAACTGTGGCAACTTCGTTACTTGAGGCTAGTAATTTGATTGTTCTCAGGGGGGCTTCTGTGATACATTCTAATGCAAACCTTGGAGTTCATGGACAAGGTCTGCTTAATTTATCGGGGCCAGGAGATTGGATTGAAGCACAGCGTTTGGTTTTATCCCTATTTTATAGTATTCATGTTGGGCCTGGATCTGTCTTGCGTGGTCCACTGGAGAATGCAACAACTGATGATGTTACTCCAAAGCTTTACTGTGACAAAGAAGATTGCCCCTATGAATTACTTCATCCCCCTGAAGATTGCAATGTGAACTCATCCTTGTCATTCACACTTCAGATCTGCAGAGTCGAGGACATCCTTGTTGAAGGCCTTATAAAAGGTTCTGTTGTTCATTTCCACAGGGCAAGGACCATAAGTGTTGAATCTTCTGGAACAATATCTGCCTCTGGAATGGGCTGTACTGGTGGTTTGGGCCATGGAAATACTCTAAGTAATGGTATTGGCAGTGGTGGTGGGCATGGTGGTACCGGTGGTGAAGCATTTTATAATGATAATCATGTTAAAGGTGGCTGTTCATATGGGAGTGCAACCCTGCCCTGTGAACTTGGTAGTGGAAGTGGAAATGGCAACTCTACTGGAACCACAGCTGGGGGTGGTATCATAGTTGTTGGATCATTAGAACATCCTTTGTCAAGTTTGTCTATTCAAGGTTATGTAAAAGCTAATGGAGGAAATTTTGAACCGCAAATCAGAAACGAAAAATTTGCAATATTTGACAATTTTACTGGAGGTCCCGGGGGTGGATCTGGTGGCACTATACTAATGTTTCTACATATGCTCACCATTGGGAAATCAGCTGTTCTTTCTAGTATGGGGGGATATAGCAGTTCTAATGGAAGTGGTGGTGGAGGTGGTGGAAGAATTCATTTTCATTGGTCCGACATTCCCACTGGTGATGTTTATCTGCCAATTGCTAGTGTGAAAGGAGACATTCAGATCTGGGGAGGAAAGGGTAAGGGCCAGGGTGGCTCTGGAGCAAATGGAACTATAACTGGGAAGGCTTGCCCCAAAGGGTTGTACGGTACCTTTTGTGAGGAATGTCCAGCTGGGACTTACAAAAATGTTACTGGATCTGATAAATCACTTTGTCACAGTTGTCCTGTCAATGAGCTTCCTCACCGTGCTGCTTATATTTCAGTCCGAGGTGGTATTACTGAAACCCCTTGTCCCTACCAATGTGTTTCGGACAGATATCATATGCCTGATTGTTACACAGCCCTTGAAGAGTTAATTTACAGATTTGGTGGGCCTTGGCTATTTGGTCTTTTTCTTATGGGTCTCTTGATCTTGTTGGCACTGGTGCTTAGTGTTGCAAGAATGAAATTTGTTGGGGTTGATGAATTACCAGGCCCAGCACCCACCCAACATGGTTCTCAAATAGACCACTCCTTCCCTTTCCTAGAGTCACTTAATGAGGTGTTGGAGACAAACAGAGTTGAGGAGTCCCAGAGTCATGTTCACAGAATGTACTTTATGGGACCTAATACTTTCAGTGAGCCCTGGCATCTGCCACATACACCTTCAGAGCAAATAAAGGATGTTGTTTATGAGAGTGAATTCAATACATTTGTGGATGAGATTAATGCTATAGCTGCTTATCAATGGTGGGAGGGAGCAATACATAGCGTTCTTTCTGTTCTTGCTTATCCGTTTGCTTGGTCCTGGCAACAGTGGCGAAGGAGATTGAAGTTGCAACGCTTACGTGAGTTTGTTCGATCAGAGTATGACCATGCTTGCCTACGTTCGTGTCGATCACGGGCCCTCTATGAAGGGATCAAGGTAAATGCAACTTCTGATTTGATGCTGGCATATATGGACTTCTTTCTTGGTGGGGATGAAAAGAGGATAGACCTTCCTCCTCGATTACATGAAAGGTTCCCAATGTCATTGCCTTTTGGAGGTGATGGAAGTTATATGGCTCCATTCACCCTTCACAACGATAATATCCTTACCAGCCTCATGAGTCAGTCAGTGCAACCTACAACCTGGTACAGATTGGTTGCTGGGCTGAACGCACAACTGCGGTTAGTTCGGCGTGGACGACTAAGAGTAACATTTCGACCTGTCCTCAGATGGCTCGAGACTCATGCCAATCCTGCATTGAGTGTCCACGGTGTGCGCATTGACCTTGCCTGGTTTCAGGCTACAAATACTGGCTATTGCCACTACGGGCTAATGGTTTATGCTCTTGAGGAAGGTTATCCAGCCACTGGAGGAAGTGCTGACGGAGCTTTAAGAACTGAGGAAAGATCACGGGTCCTGAGTGTTATAAAGGAACTTCCTTTGGGGTTTGCAATAAGCAGAGCTCATTTAAGCCCTGGTGGAAGAGTTGAAGACAATTATATGAGGCGACTAATGAATGGAGCTGCTTTAGATGTAAACAATTTGCAGATGCTTGACGAGAAGAGAGATATCTTTTATCTTCTCTCTTTTATACTTCAGAATACAAAACCTGTTGGGCATCAGGATCTTGTTGGTCTAGTAATATCAATGTTGCTTCTAGGAGATTTTAGTTTAGTATTACTTACGCTGCTTCAGTTGTATTCAATTTCTATGGTGGATGTCTTCCTTGTGTTGTTTATATTACCTTTCGGCATTCTTCTCCCATTTCCTGTCGGAATTAATGCTCTCTTTAGTCATGGACCAAGGCGTTCTGCAGGCCTTGCACGTCTTTATGCTCTGTGGAATCTTACATCCTTCATAAATGTTGTTGTTGCATTTCTTTGTGGATATATACATTACAACTCTCAATCGTCTTCCAGTAAAAGACACCCGAGCATTCAGCCATGGAGTATCATGGACGAAAGTGAATGGTGGATTTTCCCAGCTGGATTGGTTTTGTGTAAATTATTCCAGTCTCAACTCATTAATTGGCATGTTGCCAATCTGGAAATTCAAGACCGTTCCTTGTATAGTAACGATTTTGAGCTGTTCTGGCAGTCATGA

Predicted protein sequences of Glyma04g09230

Limit To All Plant Sequences

>Glyma04g09230.1   sequence type=predicted peptide   gene model=Glyma04g09230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARFRFRRLRFLAIFVVVVVFASDELESERELSVTDLDWNLFHQDYSPPAPPPPPPHPPSVSCVDDLGGVGTLDTTCKIVNDVNLTRDVYIAGKGNFNILPGVRFLCEIPGCMVTVNVTGNFSLGSNSSIVTGAFEFESENAVFGNESVVNTTGMAGDPPPQTSGTPQGVEGGGGGHGGRGASCLVDTTKLPEDVWGGDAYSWASLQNPYSFGSRGGSTSKESDYGGLGGGLVRMVVHQIVEMNATVLADGGDGGTKGGGGSGGSIYIKAYRMTGNGIISACGGNGFAGGGGGRVSVDVFSRHDEPKIYVHGGKSLGCPENAGAAGTLYDAVPRSLIVDNFNMTTDTETLLLEFPNQPLWTNVYVRNKARATVPLLWSRVQVQGQISILQGGVLSFGLRHYATSEFELLAEELLMSDSVMKVYGALRMSVKMFLMWNSKMLIDGGEDITVATSLLEASNLIVLRGASVIHSNANLGVHGQGLLNLSGPGDWIEAQRLVLSLFYSIHVGPGSVLRGPLENATTDDVTPKLYCDKEDCPYELLHPPEDCNVNSSLSFTLQICRVEDILVEGLIKGSVVHFHRARTISVESSGTISASGMGCTGGLGHGNTLSNGIGSGGGHGGTGGEAFYNDNHVKGGCSYGSATLPCELGSGSGNGNSTGTTAGGGIIVVGSLEHPLSSLSIQGYVKANGGNFEPQIRNEKFAIFDNFTGGPGGGSGGTILMFLHMLTIGKSAVLSSMGGYSSSNGSGGGGGGRIHFHWSDIPTGDVYLPIASVKGDIQIWGGKGKGQGGSGANGTITGKACPKGLYGTFCEECPAGTYKNVTGSDKSLCHSCPVNELPHRAAYISVRGGITETPCPYQCVSDRYHMPDCYTALEELIYRFGGPWLFGLFLMGLLILLALVLSVARMKFVGVDELPGPAPTQHGSQIDHSFPFLESLNEVLETNRVEESQSHVHRMYFMGPNTFSEPWHLPHTPSEQIKDVVYESEFNTFVDEINAIAAYQWWEGAIHSVLSVLAYPFAWSWQQWRRRLKLQRLREFVRSEYDHACLRSCRSRALYEGIKVNATSDLMLAYMDFFLGGDEKRIDLPPRLHERFPMSLPFGGDGSYMAPFTLHNDNILTSLMSQSVQPTTWYRLVAGLNAQLRLVRRGRLRVTFRPVLRWLETHANPALSVHGVRIDLAWFQATNTGYCHYGLMVYALEEGYPATGGSADGALRTEERSRVLSVIKELPLGFAISRAHLSPGGRVEDNYMRRLMNGAALDVNNLQMLDEKRDIFYLLSFILQNTKPVGHQDLVGLVISMLLLGDFSLVLLTLLQLYSISMVDVFLVLFILPFGILLPFPVGINALFSHGPRRSAGLARLYALWNLTSFINVVVAFLCGYIHYNSQSSSSKRHPSIQPWSIMDESEWWIFPAGLVLCKLFQSQLINWHVANLEIQDRSLYSNDFELFWQS*

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