Glyma04g09220 - SoyBase

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Report for Sequence Feature Glyma04g09220

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7366895
stop:	7378745
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32820	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:15831679-15841454 REVERSE LENGTH=1863	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR15502	Panther	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	JGI		ISS
PTHR15502:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_F4JV59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JV59_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339DD4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339DD4 related cluster n=1 Tax=unknown RepID=UPI0002339DD4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09220

Paralog	Evidence	Comments
Glyma06g09350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g087200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09220

Limit To All Plant Sequences

>Glyma04g09220.1   sequence type=CDS   gene model=Glyma04g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCTCAATTGCAGCTATCAATGACACTGACTCGAAAAGTCAGTGGGAACCCCTAGCTCCCACGAAAGAAGCACAGGAATTTCATCTTTCCCAAACTTATCATGAAGGACTTCTCAAGTTACAAGCAAAAGAGTATGAGAAGGCTCGCGAGCTCTTAGAATCTGTCCTTAAAGATCCTCTTATTGCTAATGCTCAGGTGGATAGTAGTGCCAGTGATGGTCATCTATTGCAACTCAGATTTTTGGCATTGAAAAACCTTGCCGCTGTTTTTCTTCAGCAAGGCTCTACACATTATGAGAATGCTCTACGATGTTATCTTCAAGCTGTGGAGATTGATTCTAAAGATTCTGTTGTCTGGAACCGGCTGGGAACACTGTCATGCTTGATGGGCTCACTGAGTATTTCACGTTGGGCATTTGAGCAAGGACTCTCATGTAGCCCTAATAACTGGAATTGCATGGAGAAGCTTTTGGAAGTTCTTATTGCAATTGGTGATGAGGTTGCTTGCCTTTCTGTCTCTAAATTGATTTTGAGGCACTGGCCCTCGCATTCTCGTGCTTTGCATGTTAGAAATACCATCGAAGAATCAGAACCTTTGCGATTTGCTCCAAGAGGCATAGACAAATTGGAACCTCAACATGTGCGGCTCAAATTTCCTGACAAGAGGAAAGCTACTAATGAGAATGTAGATGAGGATGTTGCATTCAAAAAGCTGAACCAGAATAAAGAACTGCACCTGACAGAAGTTTCCTGGGTGGCTCTTGCTGATGCACTTCTGGAAATCTTATCACCACAAAGTTCCAAGATGGATCCTGAAAAAGCATTCAGTTCTCCTGATATTAGGCTAAGCATAATCTTACCTAGTAGCTCAGAAGCTGTTATGAACACTGTGGAAATGAAAGGGTCCAATTGTGAAAATAGTGTTTCTGGTGATGGTAACATAGAACGATCAAGTGCTTTTAAAGAGAAAGAAGCTAATATCCAAGAAGAACAACCGCATGAAAGGCGAAGTTCTCGACTTGAAAGGCTCCGGAGTCGTAAACCAGGGAAAGAAGAATCTGATTCTTCTTGTGGAAAGGACCCTACCAAGGTTGTCATTCAATATTTAGAGCCATTTATTTCTGGTGGATTGGGGGGTCAAGATACAATTGATAGAGATACCACGAAAGTATCCTGTTTAGGAAATTCTGAATATTATAATGTTTCTGCATTTTTAAGAGAAACTTCAAACAATTATGGTGCTTATCATATGGGGCACTTGCTTTTAGAAGAAGTTGCAAGACAAGGTCTCACATATCAGGATGCTTTTGTCAAATTTTTGGAGTTGGAAAAGTTGACAAGGCATTGGGGAAAGGAGAGAACTGCTGAATGTAATATTTTTCTTGCTGAGCTGTATTATGACTTTGGGTCATGCTCCCCCACTGGTTCTAAACAATTGGAATTTATTTCTGAGACGTCTTATCATCTTTGTAAGATTATAGAATCTGTAGCTTTAGATTATCCTTTTCACTTGACTCATGCCTTGAATGAAAATAGTTTTTCAATAGATAGTAACCAAGAGACCCATGGAAAAACAATAAATACCTCGACTGAGAGCAATTCAAATTTAGACAGCTCACTTCTGATGAAAAACTGTCCCCTTTGGTCTCGATTCTTCTGGCTAAGTGGGAGATTGTCTATTGTTGATGACAACAGGGCAAAAGCATGTCAAGAATATTGTATTGCTTTGACACTTTTGGCGAAGAGAGAAAAGGAAAATTCTCTATGTTCAGTCCCCCGCCCACATTGCAAGGCTGTAAAAGAGCTAAACTTTGATAGAGTTCTTGATGAAATTAATATATTAAAGGTCAATTTCTTGATGGAAAAGTCTGTCATTAAGATGATGGAACAAGAAAAGTTTTTGGAGTGTGTATCCCTGCTTTCTCCACTTCTATTCTCCACACAGGATGTCTACCCCAATTCATTCTCTTTATCCATGACTGATAAAAGAGATGAAAAGATAACTTCCACTGAACTTATGGCTGTAGATGTTCTAATGGAAGCATGTCAAAAAACAAAGCCAATGGATGTAGAGATGTATTTTAATTGTCATTATAGAAAGCTGAAAATACTTATGACAAAGATGGGTTTAAAGACATGTATTACATCATTTAAGTCTTCTGATCAAGCACCTATTTTAACTGTGTCTCCTAATTTTGATATTGATTCAAAGGAAAGTTCTAGCAAGAACTGTAGTCACTTGGTCACGGATGAAGTGAAGGCACTCTCTGACTGTATTTCACAAGTGAAGAAAATTATCGATCAACATGGAGATTCTGATGGCCTTTCTGTTCCAACAAGCAGCATTTGTCAAATGCAATCCCTGCTGTTGTTAATCATGAGCTATGTTGGCAACATACTTGCCCTCAACAAAGCCTCAGCACAAGTAATTTCTGATCAAGCTGAAAGCAGCTGTTTCGTTGATGCAGCCATTGTTTTCTGCAAACTCCAGCATCTTAGCCCAACCATGCCTATCAAGACTCAAGTTGATTTAATTGTTGCAACACATGACTTGCTTGCTGAATATGGGCTTTGCTGTTTGGGTGAAGGTGGCAAAGGTGAAGAAGGAACATTTCTTAGATTTGCGATAAAGCATCTCTTGGCCTTGGATACGAAGCTTAAATCCAGCTTTAACCATAAAGAATCAATGCAATGTGAAGAAGTGTCCAAAAACAGTCTCGTCAATGTGTCTGTTGAAGAATCAAAATTGGATGCATTAGACATCCAGATGGATTTGACCAAAATTGATGAAATTAATTCAGAGAAAAAGGATGTTTCTGAAGGAATAATATCCAAAGGCATTTCATCTTGCAGAGTTCATGATAAAGACGGTAAGGAAGTAGAGTTTGAAAATCATGGAGGTGCTGGCACTGGCAGTAAGTTAATTAAGGGCGAAAATTTAAGCAATCAATTGATTGAATGTGAAGATGAACTTTCTGAATATGAACGGGAGGAACTTGAGTCTAAAATTGACTGTGCCTTAGATCAGTGCTTTTTCTGTTTATATGGATTACATCTGAGATCTGATTCATCTTATGAGGATGATCTAGTGGTGCACAAAAACACAAGCCGAGGAGATTATCAAACCAAGGAACAATGTGCTGATGTTTTCAAGTATGTTCTTCCCTATGCAAAGGCATCTTCTAGGACTGGACTGGTCAAACTTCGTAGAGTTTTAAGAGCTATTAGGAAGCACATTCTGCAGCCACCAGAGGACCTCTTGGCAGGAAACCCTATTGATAAGTTCTTAGATGATCCTAATCTATGTGAAGATAAGCTCTCAGAGGAGGCTGGGTCTGATGGGTTTCTTGAATCTATTACTAAGAGAATGTTTCCTGATGTGGGTGGCCTTGCTCAGTATAATGCAACATTATTGAGGAGGTCTGAGCCATATTTGGAGGTATACTGTAACTTGTATTATTTCTTGGCTCTGTCTGAGGAAATGAGTGCAACAGATAAGTGGCCTGGATTTGTGCTGACCAAGGAAGGGGAAGAATTTGTTGAACAAAATGCAAAGCTCTTCAAATATGATCTCATGTACAATCCTCTGCGCTTTGAAAGCTGGCAGAGACTTGGAAATATTTATGATGAGGAAGTAGATTTGTTACTAAATGATGGTAGCAAGCACGTTAATGTAGTAGGGTGGAGGAACAATGCTACTTTATCCGAGAGAGTGGAAACAAGCCGAAGGAGGAGTAGACGGTGCCTACTAATGAGTTTAGCTTTGGCAAATACATCTGCTCAGCAGTGTGAGATACACGAGTTATTGGCATTGGTGTACTACGACAGTCTTCAAAATGTAGTCCCATTTTATGATCAGAGATCTGCTTTGCCCTTAAAGGATGCGGCATGGATGATGTTTTGTGAGAACTCAATGAAGCATTTTAAGAAAGCCTTCGCACTTAAGCAAGATTGGTTGCATGCCTTTTACTTGGGTAAACTCAGCAAAAAACTTGGATATTCACACGAAATTGCATTATCATATTACAATAAAGCTATTGCTTTGAACACATCAGCTGTTGATCCTGTCTATAGGATGCATGCCTCACGTTTGAAATTATTATTTAAGTGTGGAAAGCAGAATTTGGAGATTTTGAAGGTTCTCTCGGCAAACTCCTTTAATCAATCTGTAAAAGAAGCTGTCACAAGTATTCTTATTGGTATTGATAGCTCATTTTTAAATACAAAGGAGAGACATATTGATGCCAATTTTGTGGAAACAAAGCATGAAGAGTTGCTCAAATTGGATACAGTATGGTCTATGCTTTACAATGATTGCCTTTCTGCTCTTGAAACATGCGTAGAGGGGGATCTCAAACATTTCCATAAGGCCAGATACATGCTGGCTCAAGGACTGTACAAAAGAGGTGAGAGTGGTGATATAGAGAGGGCAAAAGATCATCTATCTTTCTGCTTCAAATCTTCACGCTCATCATTTACAATAAATATGTGGGAAATTGATAGCACAGTAAAAAAAGGAAGGCGCAAGACACCAGGTACTGCTGGGAACAAAAAATCCCTTGAGGTTAACTTACCTGAAAGTTCTCGAAAATTTATTACTTGCATTCGAAAGTATTTGCTGTTTTATCTCAAACTATTGGAAGAGACTGGAGATAGATGTATTCTCGAACGTTCATATGTTGCTCTTCGTGCAGATAAACGGTTTTCATTATGTATTGAAGATCTTATACCAGTGGCTATCGGAAGGTATCTAAAGGCCCTGATTTCAACTATGTGCCATTCTCAGACTACTGCCTCTGGTTCAGTGAGCAGTTCTAACAATGTGCTGGAGAGAATGTTTGCATTGTTCATGGAGCAAGGGAGCTTATGGCCAGAAATATGCAGTTTGCCCGAAATTGAAGGCTCAGATATGTCAGAGACTATCATATATGGATATCTTCATGAACATATTGTATTGTTGGAGAAAAATGGAAAACTGGAAACTCTTGAAGCAACAAATGAGAAGATTAGGAAGCGTTCTAAGAATCCAAAGTTCTCAGACAGTAATTGTGCAAAAGTTGGCAAGCATGCTTCTGTTGCTTGGTGTCGATCTCTTGTATATAATTTGGCACAAATAACTCCATTATCTTGTGAATTCTCAAATGGGATTCAGGTCCTTAGTTTGACTGATGGTGGGATGGATAATAGCCAGTTGCTCTGTATTGATTTGCAGCCAAAAGAATTATGGAGTACAGCTTTTGAAGATCCAACTCATTTAGAAAAGATTGAAACAAAATGGAGCACTATTTTATCTAAAGTAAAAAATATTATTATCAAGAAAGCTTCTGATGAGAATTTGGAAACTGCAAACACTTTGCTCAGAGCTTGCTATAATTTTTACCGGGAGAGTTCTTCTGTAGTGCTTACCTCTGGACTCAACTTTTATTTGATTCCATCTCAATCAGTAACACAGACACCATTCAACCCAAGTACTGCTGGGATTGAAGCACTTGATCTGAGCATACCAAGGAAGCTTCTCTTGTGGGCCTACGTGCTATCCCATGGACGTTGTGCAAATATCTCAATTGTTGTAAAGCATTGTGAAGAAATGTCGAAGTCCAAGATGAAAAGAGGAAGTGGAACGTCACCTGCGTTATCAAACACATCTCCTGCCCCTAGTCTTCCAGGTAGCGGTAAAAATGGACCAAATTCTGCCGGAGGCATTGACGTTGATTCTGCACATGTCACAACAGTGGGGTCCGGTTCAGTTTCTAGTGGCAATACCACTAATTTTGTGAATTCACTTCCTTCATATGACATTCAGAAAAATCTCTTTGCTTCTCCCCAGCTGCATCAATGCACCAGTAACGATGCAGAACGAAGCAATTTGGTAGCACTTGAAGGAGATACAGAGGGAGATTGA

Predicted protein sequences of Glyma04g09220

Limit To All Plant Sequences

>Glyma04g09220.1   sequence type=predicted peptide   gene model=Glyma04g09220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFSIAAINDTDSKSQWEPLAPTKEAQEFHLSQTYHEGLLKLQAKEYEKARELLESVLKDPLIANAQVDSSASDGHLLQLRFLALKNLAAVFLQQGSTHYENALRCYLQAVEIDSKDSVVWNRLGTLSCLMGSLSISRWAFEQGLSCSPNNWNCMEKLLEVLIAIGDEVACLSVSKLILRHWPSHSRALHVRNTIEESEPLRFAPRGIDKLEPQHVRLKFPDKRKATNENVDEDVAFKKLNQNKELHLTEVSWVALADALLEILSPQSSKMDPEKAFSSPDIRLSIILPSSSEAVMNTVEMKGSNCENSVSGDGNIERSSAFKEKEANIQEEQPHERRSSRLERLRSRKPGKEESDSSCGKDPTKVVIQYLEPFISGGLGGQDTIDRDTTKVSCLGNSEYYNVSAFLRETSNNYGAYHMGHLLLEEVARQGLTYQDAFVKFLELEKLTRHWGKERTAECNIFLAELYYDFGSCSPTGSKQLEFISETSYHLCKIIESVALDYPFHLTHALNENSFSIDSNQETHGKTINTSTESNSNLDSSLLMKNCPLWSRFFWLSGRLSIVDDNRAKACQEYCIALTLLAKREKENSLCSVPRPHCKAVKELNFDRVLDEINILKVNFLMEKSVIKMMEQEKFLECVSLLSPLLFSTQDVYPNSFSLSMTDKRDEKITSTELMAVDVLMEACQKTKPMDVEMYFNCHYRKLKILMTKMGLKTCITSFKSSDQAPILTVSPNFDIDSKESSSKNCSHLVTDEVKALSDCISQVKKIIDQHGDSDGLSVPTSSICQMQSLLLLIMSYVGNILALNKASAQVISDQAESSCFVDAAIVFCKLQHLSPTMPIKTQVDLIVATHDLLAEYGLCCLGEGGKGEEGTFLRFAIKHLLALDTKLKSSFNHKESMQCEEVSKNSLVNVSVEESKLDALDIQMDLTKIDEINSEKKDVSEGIISKGISSCRVHDKDGKEVEFENHGGAGTGSKLIKGENLSNQLIECEDELSEYEREELESKIDCALDQCFFCLYGLHLRSDSSYEDDLVVHKNTSRGDYQTKEQCADVFKYVLPYAKASSRTGLVKLRRVLRAIRKHILQPPEDLLAGNPIDKFLDDPNLCEDKLSEEAGSDGFLESITKRMFPDVGGLAQYNATLLRRSEPYLEVYCNLYYFLALSEEMSATDKWPGFVLTKEGEEFVEQNAKLFKYDLMYNPLRFESWQRLGNIYDEEVDLLLNDGSKHVNVVGWRNNATLSERVETSRRRSRRCLLMSLALANTSAQQCEIHELLALVYYDSLQNVVPFYDQRSALPLKDAAWMMFCENSMKHFKKAFALKQDWLHAFYLGKLSKKLGYSHEIALSYYNKAIALNTSAVDPVYRMHASRLKLLFKCGKQNLEILKVLSANSFNQSVKEAVTSILIGIDSSFLNTKERHIDANFVETKHEELLKLDTVWSMLYNDCLSALETCVEGDLKHFHKARYMLAQGLYKRGESGDIERAKDHLSFCFKSSRSSFTINMWEIDSTVKKGRRKTPGTAGNKKSLEVNLPESSRKFITCIRKYLLFYLKLLEETGDRCILERSYVALRADKRFSLCIEDLIPVAIGRYLKALISTMCHSQTTASGSVSSSNNVLERMFALFMEQGSLWPEICSLPEIEGSDMSETIIYGYLHEHIVLLEKNGKLETLEATNEKIRKRSKNPKFSDSNCAKVGKHASVAWCRSLVYNLAQITPLSCEFSNGIQVLSLTDGGMDNSQLLCIDLQPKELWSTAFEDPTHLEKIETKWSTILSKVKNIIIKKASDENLETANTLLRACYNFYRESSSVVLTSGLNFYLIPSQSVTQTPFNPSTAGIEALDLSIPRKLLLWAYVLSHGRCANISIVVKHCEEMSKSKMKRGSGTSPALSNTSPAPSLPGSGKNGPNSAGGIDVDSAHVTTVGSGSVSSGNTTNFVNSLPSYDIQKNLFASPQLHQCTSNDAERSNLVALEGDTEGD*

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