Glyma04g09100 - SoyBase

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Report for Sequence Feature Glyma04g09100

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7255586
stop:	7259715
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15215	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:5238096-5239770 FORWARD LENGTH=258	SoyBase	E_val: 3.00E-64	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006346	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing	SoyBase	N/A	ISS
GO:0033562	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotranscriptional gene silencing by small RNA	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JUX4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JUX4_SOYBN	SoyBase	E_val: 9.00E-171	ISS
UniRef100_Q9XI47	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F9L1.16 n=1 Tax=Arabidopsis thaliana RepID=Q9XI47_ARATH	SoyBase	E_val: 2.00E-61	ISS

Expression Patterns of Glyma04g09100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09100

Paralog	Evidence	Comments
Glyma06g09200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g086200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g09100

Limit To All Plant Sequences

>Glyma04g09100.2   sequence type=transcript   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGAATTTAAGCGGAAAAGAAAAGAAAAAGAAAAAAGTTGCTAGGGTTTTCACTGCACTTGAGGTTCGTAGAGGAGAGAAATTCAAATTCAGTGTAAAGAAATTAGATTTTTGAACGAAAGCGACGAACTTTAAGTTCATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGACCAATGCGACTGAGTTGGCCATAATTATTGCAGTTGTGTTACAGTCATAGACATCCCCAAAACGGATTGAGAAAATGGAGAAATTGTTGAGGGAACCTACGGGGGGGTCATTGGGCAAGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGCCGTGCTGGCAAGCCTATCATAAAATGGACAGAGATTGAGAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGCAAGGAAGGAGAAACTATGCAACACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCATAGATTTCTTAGCACAGGGGAAGCTGAAGTCCATGTCAGATTTGTTGGATTTGGAGCTGATGAAGATGAGTGGATCAATATCAAAACTTCAGTACGCCAACGCTCCATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATGGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGCAGATGTCTCATCTTAATTCGTTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGATCAAGATCTTAAGCACATGTGGGATCAATTCTTTTTGACATTCAAGGTGAGCTTTCAAACAGTCAGCAAAGGACCTGGGTGCAGCAGGAAGCAACTAGCACTTGACATTGAGTATCGTGCTCGTTCATGCAAATTTCATAGCTAAAACATGTAAAGCCTTTTCCCCGTCCACTTAAGTTTTGGCTGGGAGTGCTGTAGAAGAAGAATTATGAAACTCGTGGCCCTTTTTTTGTCATCATTGGTAGATAAGGGAAGTAGATGGTAAAAGATGAGTAAGCTTCAACTATGGAATTGTTAATACACTAGGGGGAAAAGACCTCATTTTATAAAATGTTTTTCATCAAAGGCAATGGTACCTGATATGGATACCTCCCCTCATCATTCGTATGTTTCCGGAACTGAATCGAAGGAAAATATAAAGTTTTATGGTTCTATGGCGGGTAAATAAATTAAAGTATGATTTTAGTAAAGTTTATTGTTTTTTTTACCTGGATCATAAATTAATCTC

>Glyma04g09100.3   sequence type=transcript   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGAATTTAAGCGGAAAAGAAAAGAAAAAGAAAAAAGTTGCTAGGGTTTTCACTGCACTTGAGGTTCGTAGAGGAGAGAAATTCAAATTCAGTGTAAAGAAATTAGATTTTTGAACGAAAGCGACGAACTTTAAGTTCATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGATTGAGAAAATGGAGAAATTGTTGAGGGAACCTACGGGGGGGTCATTGGGCAAGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGCCGTGCTGGCAAGCCTATCATAAAATGGACAGAGATTGAGAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGCAAGGAAGGAGAAACTATGCAACACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCATAGATTTCTTAGCACAGGGGAAGCTTCCATGTCAGATTTGTTGGATTTGGAGCTGATGAAGATGAGTGGATCAATATCAAAACTTCAGTACGCCAACGCTCCATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATGGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGCAGATGTCTCATCTTAATTCGTTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGATCAAGATCTTAAGCACATGTGGGATCAATTCTTTTTGACATTCAAGGTGAGCTTTCAAACAGTCAGCAAAGGACCTGGGTGCAGCAGGAAGCAACTAGCACTTGACATTGAGTATCGTGCTCGTTCATGCAAATTTCATAGCTAAAACATGTAAAGCCTTTTCCCCGTCCACTTAAGTTTTGGCTGGGAGTGCTGTAGAAGAAGAATTATGAAACTCGTGGCCCTTTTTTTGTCATCATTGGTAGATAAGGGAAGTAGATGGTAAAAGATGAGTAAGCTTCAACTATGGAATTGTTAATACACTAGGGGGAAAAGACCTCATTTTATAAAATGTTTTTCATCAAAGGCAATGGTACCTGATATGGATACCTCCCCTCATCATTCGTATGTTTCCGGAACTGAATCGAAGGAAAATATAAAGTTTTATGGTTCTATGGCGGGTAAATAAATTAAAGTATGATTTTAGTAAAGTTTATTGTTTTTTTTACCTGGATCATAAATTAATCTC

Coding sequences of Glyma04g09100

Limit To All Plant Sequences

>Glyma04g09100.1   sequence type=CDS   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGATTGAGAAAATGGAGAAATTGTTGAGGGAACCTACGGGGGGGTCATTGGGCAAGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGCCGTGCTGGCAAGCCTATCATAAAATGGACAGAGATTGAGAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGCAAGGAAGGAGAAACTATGCAACACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCATAGATTTCTTAGCACAGGGGAAGCTGAAGTCCATGTCAGATTTGTTGGATTTGGAGCTGATGAAGATGAGTGGATCAATATCAAAACTTCAGTACGCCAACGCTCCATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATGGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGCAGATGTCTCATCTTAATTCGTTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGATCAAGATCTTAA

>Glyma04g09100.2   sequence type=CDS   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAATTGTTGAGGGAACCTACGGGGGGGTCATTGGGCAAGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGCCGTGCTGGCAAGCCTATCATAAAATGGACAGAGATTGAGAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGCAAGGAAGGAGAAACTATGCAACACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCATAGATTTCTTAGCACAGGGGAAGCTGAAGTCCATGTCAGATTTGTTGGATTTGGAGCTGATGAAGATGAGTGGATCAATATCAAAACTTCAGTACGCCAACGCTCCATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGAAAATGGGAGACCCAGTCCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGCAGATGTCTCATCTTAATTCGTTATGATCATGACAACAGTGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCGCAGATCAAGATCTTAA

>Glyma04g09100.3   sequence type=CDS   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCGCTTGCGTCCTAGGAATCGAGCGGTCTTTTCTGGATTTACAAATGCCGAGATTGAGAAAATGGAGAAATTGTTGAGGGAACCTACGGGGGGGTCATTGGGCAAGGAATTTTACCAAAAACTGGCTCGAAGTTTCAACTATTCCTCTGGCCGTGCTGGCAAGCCTATCATAAAATGGACAGAGATTGAGAGTTGGTTTCAGACTAGGCTCCAAGACTCACCACAAGTCCCTAGCAGTGAGTTGATGGTTCCTAAATGCAAGGAAGGAGAAACTATGCAACACCCATCAGAGTTGGAATTTGAAGCAAGATCATCAAAAGATGGAGCATGGTATGATGTTGAGGCATTTCTAGCTCATAGATTTCTTAGCACAGGGGAAGCTTCCATGTCAGATTTGTTGGATTTGGAGCTGATGAAGATGAGTGGATCAATATCAAAACTTCAGTACGCCAACGCTCCATTCCTTTGGAAAGCACAGAGTGTTCCAACCTGA

Predicted protein sequences of Glyma04g09100

Limit To All Plant Sequences

>Glyma04g09100.1   sequence type=predicted peptide   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRLRPRNRAVFSGFTNAEIEKMEKLLREPTGGSLGKEFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSPQVPSSELMVPKCKEGETMQHPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVHVRFVGFGADEDEWINIKTSVRQRSIPLESTECSNLKMGDPVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCLILIRYDHDNSEERVRLRRLCRRSRS*

>Glyma04g09100.2   sequence type=predicted peptide   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKLLREPTGGSLGKEFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSPQVPSSELMVPKCKEGETMQHPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEAEVHVRFVGFGADEDEWINIKTSVRQRSIPLESTECSNLKMGDPVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCLILIRYDHDNSEERVRLRRLCRRSRS*

>Glyma04g09100.3   sequence type=predicted peptide   gene model=Glyma04g09100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRLRPRNRAVFSGFTNAEIEKMEKLLREPTGGSLGKEFYQKLARSFNYSSGRAGKPIIKWTEIESWFQTRLQDSPQVPSSELMVPKCKEGETMQHPSELEFEARSSKDGAWYDVEAFLAHRFLSTGEASMSDLLDLELMKMSGSISKLQYANAPFLWKAQSVPT*

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