Glyma04g09080 - SoyBase

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Report for Sequence Feature Glyma04g09080

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7247332
stop:	7253939
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g09080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25760	AT	Annotation by Michelle Graham. TAIR10: Protein kinase family protein \| chr2:10985118-10988652 REVERSE LENGTH=673	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1164	KOG	Casein kinase (serine/threonine/tyrosine protein kinase)	JGI		ISS
PTHR11909	Panther	CASEIN KINASE-RELATED	JGI		ISS
PTHR11909:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_D8V7I8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Casein kinase I n=1 Tax=Sesamum indicum RepID=D8V7I8_SESIN	SoyBase	E_val: 0	ISS
UniRef100_I1JUX3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUX3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma04g09080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g09080

Paralog	Evidence	Comments
Glyma06g09190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g09080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g086000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g09080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g09080

Limit To All Plant Sequences

>Glyma04g09080.1   sequence type=CDS   gene model=Glyma04g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGAGCTGCGTTCCCGGCCACACATAAGCCGCCTTGTAGACAGCGCAAACGCCAATCCGACCACTCAGCCAGCCTCGCCGCCGGCCGCCGGAGCCTGTCGAAGGAAGCCAGCCGTCGCCGCCGCTCCGACCGGGAGGAATCGCAGGCTGAACAACGCGATTGCCGTCGCCGCCGATCAAATCCTGAACGCCGAAGACGAAGGTGGTGCCGTTCGTGGAACCAGAGCGAGGAAGCTGAAACAAGATCAAGGAGTGAAGGAGAATATTAAAAATAAGAATGTTTCAGTTAGGGTTTTGGAAGTGGAAGGCATGGATGAGTACGATAGTGGTAGCCGCAGTGCCGATAAGGCTCCCGGAGCTGAAGACGAAGGCACCACACCTCCTATTCCAGAGAAGGTTCAGGTTGGTGGTTCCCCATTGTACAGAGTTGAGAGAAAACTTGGGAAAGGAGGATTTGGGCAGGTTTATGTTGGTCGGCTGCTCGGAGCTGCGAATTCTAGTGAACGAACTGGTGCTGGGGCTGTTGAGGTAGCCTTAAAATTTGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCTCCATATGAGTGGCAGGTTTACAATGCACTAGGTGGTAGTCATGGTGTTCCGCAAGCTCATTATAAGGGACAGCAAGGTGACTACTATATTATGGTCATGGATATACTTGGCCCTAGTCTGTGGGACGTTTGGAATAACAACAATCCTCACATGATGTCTACTGAAATGGTTGCATGTATTGCAATCGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTACACGGTGATGTAAAACCTGAGAACTTTTTGCTTGGACTCCCTGGAACTCTTGATGAAAAGAAGTTGTTTCTGGTTGATCTTGGATTAGCAACTCGGTGGCGTGATAGTTCGACTGGCCTTCATGTTGACTATGATCAACGTCCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGCGTGCATGCCCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTACACTCTTGTCTTTCTTCTTCGTGGTCGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGGTTTCTTGTCTGCAAGAAAAAGATGGCCACTTCTCCAGAAACTTTGTGTTGCTTTTGTCCTCAACCATTTCGACAATTTGTTGAATATGTGGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTTTTCGATGGAATTGTGGGCCCAAATCCAGATATCAGGCCAATAAACACTGAAGGTGCTCAGAAGCTTATATGTCAGGTTGGACATAAGAGGGGGCGATTGACCATAGAAGAAGATGATGATGAACAACCAAATAAGAAGGTTCGAATGGGAATGCCTGCTACACAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTTGCTGATGTGCGGCTGGCCCAACACATTGATAAAGGAAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTTCTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACCGCACAAGTTTATGAACTGTCTCCCCACTTCCTTCACAAGGAATGGATTATGGAACAGTGGGAGAAGAATTATTACATTAGTGCCATAGCTGGGGTTAATAATGGATCCTCATTGGTTGTAATGTCTAAAGGTACCCAGTACTTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTAAATGGATCAACAAAAAGTGGAGAGAAGGATTTTATGTCACTGCTATGGCCACTGCCGGCTCTAGATGGGCAATTGTTATGTCCCGTGGGGCTGGTTTTTCAGACCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGCATTCATCGAAGGTGGGATAGTGGTTATCGCATCACCTCAACTGCTGCAACATGGGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGGAAAAATGGGCTAAGAACCTCTATATCGCATCTATTTGTTATGGGAGAACAGTGTCATAA

Predicted protein sequences of Glyma04g09080

Limit To All Plant Sequences

>Glyma04g09080.1   sequence type=predicted peptide   gene model=Glyma04g09080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPELRSRPHISRLVDSANANPTTQPASPPAAGACRRKPAVAAAPTGRNRRLNNAIAVAADQILNAEDEGGAVRGTRARKLKQDQGVKENIKNKNVSVRVLEVEGMDEYDSGSRSADKAPGAEDEGTTPPIPEKVQVGGSPLYRVERKLGKGGFGQVYVGRLLGAANSSERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPQAHYKGQQGDYYIMVMDILGPSLWDVWNNNNPHMMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGLPGTLDEKKLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTIEEDDDEQPNKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCSNLWALIMDAGTGFTAQVYELSPHFLHKEWIMEQWEKNYYISAIAGVNNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATWDQAAFVLSVPRRKPADETQETLRTSAFPGTHVKEKWAKNLYIASICYGRTVS*

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