Report for Sequence Feature Glyma04g08990
Feature Type: gene_model
Chromosome: Gm04
Start: 7123655
stop: 7125290
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g08990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G32890 AT
Annotation by Michelle Graham. TAIR10: GATA transcription factor 9 | chr4:15875598-15876615 FORWARD LENGTH=308
SoyBase E_val: 1.00E-83 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0007623 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian rhythm
SoyBase N/A ISS
GO:0009416 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to light stimulus
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PTHR10071 Panther
TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR)
JGI ISS
PTHR10071:SF113 Panther
ZINC FINGER (GATA TYPE) FAMILY PROTEIN
JGI ISS
PF00320 PFAM
GATA zinc finger
JGI ISS
UniRef100_G7J3H0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7J3H0_MEDTR
SoyBase E_val: 2.00E-115 ISS
UniRef100_I1JUW3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUW3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g08990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma04g08990
Paralog Evidence Comments
Glyma06g09080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma04g08990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g084900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g08990
Coding sequences of Glyma04g08990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g08990.1 sequence type=CDS gene model=Glyma04g08990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGCACAAGAGTTTTTCCAGAACACCTTCTGCCCCCAATTCCCCTCAGACAGCAACATCACTCCCTCCAACGCCAACCCCTCCGCCGCCACCACCGACCACTTCCTCGTAGAAGACTTCTTCGACTTCTCCAACGACGACGACGCCACCTTCGACTCCCTCCCCACCGACGTCGACTCCCCCACCGTTACCCCTGTCGACACCACCACCAACTCCAATTTCCCCGCCTCCGCAGACGCCCATTTCCCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAATTGGAATGGCTGTCGAAATTTGCGGACGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATAACGGGTGTGAGAGCGCAAAACGATGCTGCATCGTCTGAAACGCGTGACCCAAACCCGGTTATGTTCAACCCGCAAGTGTCGGTTCGGGGCAAGGCTCGGAGCAAGCGGACACGTGGACCCCCATGCAACTGGACCTCTCGCCTCGTTGTGCTCTCCCCGAACACGAAGTCGTCGTCGTCTTCTCACTCCGGCGCGGAAGGCGGCAGCGAGGGGCGGAAGTGCCTGCATTGCGCAACGGACAAGACCCCACAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGCAACGCGTGCGGCGTGAGGTACAAGTCTGGGCGGCTGGTGCCAGAGTACAGGCCCGCCGCGAGCCCAACGTTTGTTCTGACGAAGCACTCGAATTCGCACCGCAAGGTGCTGGAGCTGCGGCGGCAGAAGGAAATGGTGAAGGTCCAGCACCAGCAGCATCAGTTTCTCCAATTGCAGCATCAGCAGAACATGATGTTCGATGTCCCATCATCCAACGGTGAGGATTTCCTCATCCATCAGCACGTGGGCCCAAATTTCACGCACCTCATCTAG
Predicted protein sequences of Glyma04g08990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g08990.1 sequence type=predicted peptide gene model=Glyma04g08990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEAQEFFQNTFCPQFPSDSNITPSNANPSAATTDHFLVEDFFDFSNDDDATFDSLPTDVDSPTVTPVDTTTNSNFPASADAHFPGDLSVPYDDLAELEWLSKFADESFSSEDLQKLQLITGVRAQNDAASSETRDPNPVMFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTKSSSSSHSGAEGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVKVQHQQHQFLQLQHQQNMMFDVPSSNGEDFLIHQHVGPNFTHLI*