Glyma04g08980 - SoyBase

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Report for Sequence Feature Glyma04g08980

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7112002
stop:	7116901
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11630	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:3740545-3740909 FORWARD LENGTH=93	SoyBase	E_val: 6.00E-28	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0071433	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall repair	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K9E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9E4_SOYBN	SoyBase	E_val: 2.00E-53	ISS

Expression Patterns of Glyma04g08980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08980

Paralog	Evidence	Comments
Glyma06g09060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g084800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma04g08980

Limit To All Plant Sequences

>Glyma04g08980.2   sequence type=transcript   gene model=Glyma04g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTCTTCTGCATTAAAAAGTACTCCTTTAAAGAAAAACCCCCCGCAAAACCCATTCCTCAACTCAACTGCGACTGGTGAAAGCCCTATCTGTGTGGAAATAGGGTAGCTGCAACCTGCAATGGCTTCTCGTTATAGATCTGTTTCGCAACCAGCATTCTCCATAATCAAATCCACCATCACCAAACCTTCCTCGAAGCTCCTCCCGTCGTCTTTTCTCCTCAAAACTCGTTCTCCCGTTACGGCCAGGTGGGTGGGCGGTGAGCTCGGTTGCCTGCAGTCGCTGCTTCCCCTGCACTCGGCGGTTTCATCAGCGCGCCTCACCTCATGTCTGGGCATCGATTCGAGTAGGTCGAGGTCGCTGTCTCAGGGTATGCTCTGCAATGCCAACTCCGGAGTTTGATTTCTCCAAATTCTTTTTTACCCTTTTACTCTCCAAATGGGTCTCAGCACACCGCGATAAGAGATTTTGAAGACCATTCATTGGCAGATTAGAGTCTTTTTTGCTTTGCCGGGACGCTCTACTGTTAATTATTTTCAAGTTTTTTCTTGACAGTTCACTGTAACAGGTATATAGTTGGGAGAATCCTTTGATCTTCTGGTGTCTGTTGCAATGGTTCCTATAAAATGCTTGGTCAATCCTGTATTAATTGTTTTAAAGATCAACCTATGCCAACATCATTTAGTGAATAAAAAACAAAAAAATTGCTGATTGACCTCTCTATCATGTCTGTTGATGCATGTTCCTCAATATGTTAGCAGTAGAATCAGTGCATTT

Coding sequences of Glyma04g08980

Limit To All Plant Sequences

>Glyma04g08980.1   sequence type=CDS   gene model=Glyma04g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCGTTATAGATCTGTTTCGCAACCAGCATTCTCCATAATCAAATCCACCATCACCAAACCTTCCTCGAAGCTCCTCCCGTCGTCTTTTCTCCTCAAAACTCGTTCTCCCGTTACGGCCAGGTGGGTGGGCGGTGAGCTCGGTTGCCTGCAGTCGCTGCTTCCCCTGCACTCGGCGGTTTCATCAGCGCGCCTCACCTCATGTCTGGGCATCGATTCGAGTAGGTCGAGGTCGCTGTCTCAGGAAATGGGTCTCAGCACACCGCGATAA

>Glyma04g08980.2   sequence type=CDS   gene model=Glyma04g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCGTTATAGATCTGTTTCGCAACCAGCATTCTCCATAATCAAATCCACCATCACCAAACCTTCCTCGAAGCTCCTCCCGTCGTCTTTTCTCCTCAAAACTCGTTCTCCCGTTACGGCCAGGTGGGTGGGCGGTGAGCTCGGTTGCCTGCAGTCGCTGCTTCCCCTGCACTCGGCGGTTTCATCAGCGCGCCTCACCTCATGTCTGGGCATCGATTCGAGTAGGTCGAGGTCGCTGTCTCAGGGTATGCTCTGCAATGCCAACTCCGGAGTTTGA

Predicted protein sequences of Glyma04g08980

Limit To All Plant Sequences

>Glyma04g08980.1   sequence type=predicted peptide   gene model=Glyma04g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRYRSVSQPAFSIIKSTITKPSSKLLPSSFLLKTRSPVTARWVGGELGCLQSLLPLHSAVSSARLTSCLGIDSSRSRSLSQEMGLSTPR*

>Glyma04g08980.2   sequence type=predicted peptide   gene model=Glyma04g08980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRYRSVSQPAFSIIKSTITKPSSKLLPSSFLLKTRSPVTARWVGGELGCLQSLLPLHSAVSSARLTSCLGIDSSRSRSLSQGMLCNANSGV*

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