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Report for Sequence Feature Glyma04g08960

Feature Type:gene_model
Chromosome:Gm04
Start:7095951
stop:7098309
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma04g08960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G32900AT Annotation by Michelle Graham. TAIR10: Peptidyl-tRNA hydrolase II (PTH2) family protein | chr4:15879542-15880979 REVERSE LENGTH=140 SoyBaseE_val: 6.00E-28ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004045GO-mf Annotation by Michelle Graham. GO Molecular Function: aminoacyl-tRNA hydrolase activity SoyBaseN/AISS
PTHR12649Panther PEPTIDYL-TRNA HYDROLASE 2 JGI ISS
PTHR12649:SF6Panther UNCHARACTERIZED JGI ISS
PF01981PFAM Peptidyl-tRNA hydrolase PTH2 JGI ISS
UniRef100_G7J3G4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-tRNA hydrolase n=1 Tax=Medicago truncatula RepID=G7J3G4_MEDTR SoyBaseE_val: 3.00E-41ISS
UniRef100_I1JUW1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JUW1_SOYBN SoyBaseE_val: 2.00E-62ISS

Expression Patterns of Glyma04g08960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08960
ParalogEvidenceComments
Glyma06g09050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g084600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma04g08960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma04g08960
>Glyma04g08960.2   sequence type=CDS   gene model=Glyma04g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCTTTCCGTCCTAAATACTAATCAATCTCGCGACCAGCAACAACAAAAGCAAAAAGGAGAATGGTTAGCAGGAAGTTTCAAGGCTGAGAACTTCATTCCAGGGCTTGTTATAGGTTTCATTTTTGGTCTGTTGTTGGATTTATCAAAGCCCAGTAGAAATCACTTGTCCAAGAAAATGTTCTCATCTGCCAAACCTCAACAACAGCAACTCGCAGTCTCAAGCAATGGTGATCAAGAACTTAAAATGGTTCTGGTTGTTCGGCAAGACCTAAAGATGAAATCCGGAAAGATTGCATCTCAATGTGCTCATAAGATATGCAATTATTGTTAA
Predicted protein sequences of Glyma04g08960
>Glyma04g08960.2   sequence type=predicted peptide   gene model=Glyma04g08960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFLSVLNTNQSRDQQQQKQKGEWLAGSFKAENFIPGLVIGFIFGLLLDLSKPSRNHLSKKMFSSAKPQQQQLAVSSNGDQELKMVLVVRQDLKMKSGKIASQCAHKICNYC*






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