Glyma04g08950 - SoyBase

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Report for Sequence Feature Glyma04g08950

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7088049
stop:	7088734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma04g08950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G11620	AT	Annotation by Michelle Graham. TAIR10: SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related \| chr5:3739076-3740127 REVERSE LENGTH=273	SoyBase	E_val: 2.00E-59	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR21540	Panther	ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 2	JGI		ISS
PF04434	PFAM	SWIM zinc finger	JGI		ISS
UniRef100_G7J3G2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitogen-activated protein kinase kinase kinase n=1 Tax=Medicago truncatula RepID=G7J3G2_MEDTR	SoyBase	E_val: 2.00E-103	ISS
UniRef100_I1JUW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JUW0_SOYBN	SoyBase	E_val: 4.00E-136	ISS

Expression Patterns of Glyma04g08950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma04g08950

Paralog	Evidence	Comments
Glyma06g09040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma04g08950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g084500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma04g08950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma04g08950

Limit To All Plant Sequences

>Glyma04g08950.1   sequence type=CDS   gene model=Glyma04g08950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCCGTGCCTCCAATTCCAATTCTCCATACCATTACCATCACCACCCTCGTTTCAAACCAAGCCAACCCATCTCAGACCGAATAGTTCGCGCCCTCCGCCACCGCCTGCGCCTCCTCCACCGTTCCGGCTCCACCTTCTTCATATTAGGCGCCACCGGAAACGTGTACACGGTGACCCTATCCTCCTCACCCTCATGCACCTGCCCTGACCGTACAACCCCATGCAAGCACATCCTCTTCGTCTTAATTCGAGTTTTAGGCGTGTCCCTCGATGATGTGTGTCTGAGGAGGAGGACCCCTCGTCCCTGCCAGCTCCAACGCCTCCTCGGAACACCCACATTGCCGGAGGCGCTTTTCTTTAGTGGAGGGTCAACAGAGACAAAGATAGAGATGGAGGAGGGTGCCACGTGCCCGGTTTGCCTTGAGGAAATGGGGAAGGAGCAAAACCTGGTGGCATGTGGAACATGCCGTAACCCAATTCATGAAGAGTGCTTGATGAAGTGGAAGAGGACCAAGGGAAGAAGTGCTAGCTGTGTTATTTGTAGAGCAAGGTGGAGGGATAGGGTGGAGCAAGATGAGTATCTGAACCTGTCTGCTTATGTTGGCGAAGATGATGTGGAACAACCTGATGTCTGCACTTGTTAA

Predicted protein sequences of Glyma04g08950

Limit To All Plant Sequences

>Glyma04g08950.1   sequence type=predicted peptide   gene model=Glyma04g08950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESRASNSNSPYHYHHHPRFKPSQPISDRIVRALRHRLRLLHRSGSTFFILGATGNVYTVTLSSSPSCTCPDRTTPCKHILFVLIRVLGVSLDDVCLRRRTPRPCQLQRLLGTPTLPEALFFSGGSTETKIEMEEGATCPVCLEEMGKEQNLVACGTCRNPIHEECLMKWKRTKGRSASCVICRARWRDRVEQDEYLNLSAYVGEDDVEQPDVCTC*

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